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File:OSNP PGR.png

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Progesterone Receptor Gene LD Plot and four-gamete rule haplotype blocks using tag SNP's identified in two studies and an extra association, based on 374 individuals with 23andMe v3 genotypes submitted on OpenSNP. Phasing was enhanced using 1000 Genomes reference panel. Note that this is explicitly a reproduction of the original two studies with exclusion of SNP's not considered in them and choice of 4th gamete cut-off frequency. Alternative haplotype block and tag SNP definitions are possible.

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current21:46, 3 May 2014Thumbnail for version as of 21:46, 3 May 20141,110 × 750 (59 KB)Donwulff (talk | contribs)Genotypes phased using 1000 Genomes reference panel, all recognizable SNP's from original study included, tag SNP's of original study in green, 4 gamete rule cutoff frequency 0.02. http://creativecommons.org/licenses/by/3.0 Creative Commons Attribution...
21:31, 22 April 2014Thumbnail for version as of 21:31, 22 April 2014610 × 500 (21 KB)Donwulff (talk | contribs)Progesterone Receptor Gene LD Plot and four-gamete rule haplotype blocks using tag SNP's identified in two studies and an extra association, based on 374 individuals with 23andMe v3 genotypes submitted on OpenSNP.
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