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Genoset

From SNPedia
(Redirected from Genosets)

A genoset refers to a defined set of genotypes; we have coined the term to represent the combination of alleles at 2 or more loci, especially when they are not contiguous along a chromosome. Typically, these are then related to a medical (or ancestral) consequence that arises only when a particular combination of SNPs is inherited.

Promethease understands this criteria syntax.

More information about genosets can be found in the related SNPedia blog post. Note that genosets themselves are boolean, not quantitative; each genoset is either true (present) or false (absent) in an individual, based on the genoset's criteria, in the same way that a genotype (or allele) is either present or absent. Note that if a DNA microarray platform lacks a given SNP, genosets that require it (that SNP) will not return a result during a Promethease evaluation.

Most Significant

 ReputeMagnitudeSummaryModification date
"Modification date" is a predefined property that corresponds to the date of the last modification of a subject and is provided by Semantic MediaWiki.
Gs3037WeGene quality control issues.8 June 2016 05:40:37
Gs3007Data Quality issue. Your data provider is reporting heterozygosity on the Y chromosome.23 October 2016 09:50:25
Gs228Bad6sickle cell affected25 October 2012 02:21:38
Gs2676APOE1/APOE15 November 2016 18:42:06
Gs216Bad62 copies of the APO-ε4 allele6 March 2016 00:10:00
Gs121Bad5DR3/4-DQ8 individual at high risk for type-1 diabetes21 October 2011 06:04:16
Gs2615Did you mix multiple people together?23 October 2016 15:53:21
Gs2665Data Quality Warning21 September 2016 10:51:44
Gs254Bad4.1Pseudocholinesterase Deficiency9 September 2016 10:42:51
Gs245Bad44x increased risk for esophageal squamous cell cancer among Han Chinese21 October 2011 06:04:36
... further results


Most Recently Active

 ReputeMagnitudeSummaryModification date
"Modification date" is a predefined property that corresponds to the date of the last modification of a subject and is provided by Semantic MediaWiki.
Gs2676APOE1/APOE15 November 2016 18:42:06
Gs2615Did you mix multiple people together?23 October 2016 15:53:21
Gs3007Data Quality issue. Your data provider is reporting heterozygosity on the Y chromosome.23 October 2016 09:50:25
Gs1123.5Haplogroup I2 (Y-DNA)23 October 2016 00:37:13
Gs2152.1R-L2128 September 2016 00:27:29
Gs2373.1blue eyes are much more likely28 September 2016 00:25:56
Gs2665Data Quality Warning21 September 2016 10:51:44
Gs254Bad4.1Pseudocholinesterase Deficiency9 September 2016 10:42:51
Gs253Bad3.5Pseudocholinesterase Deficiency carrier9 September 2016 01:00:49
Gs10202.2Mitochondrial Haplogroup H2a2a13 July 2016 07:03:09
... further results


You can create a new genoset by clicking that link and filling in the form. But you'll still need to populate the criteria syntax.