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rs10054504

From SNPedia

Orientationplus
Stabilizedplus
Make rs10054504(C;C)
Make rs10054504(C;T)
Make rs10054504(T;T)
ReferenceGRCh38 38.1/141
Chromosome5
Position32000377
GenePDZD2
is asnp
is mentioned by
dbSNPrs10054504
ebirs10054504
HLIrs10054504
Exacrs10054504
Varsomers10054504
Maprs10054504
PheGenIrs10054504
hapmaprs10054504
1000 genomesrs10054504
hgdprs10054504
ensemblrs10054504
gopubmedrs10054504
geneviewrs10054504
scholarrs10054504
googlers10054504
pharmgkbrs10054504
gwascentralrs10054504
openSNPrs10054504
23andMers10054504
23andMe allrs10054504
SNP Nexus

SNPshotrs10054504
SNPdbers10054504
MSV3drs10054504
GWAS Ctlgrs10054504
GMAF0.4155
Max Magnitude
? (C;C) (C;T) (T;T) 28
GWAS snp
PMID [PMID 23184150OA-icon.png]
Trait Renal cell carcinoma
Title Common variation at 2q22.3 (ZEB2) influences the risk of renal cancer.
Risk Allele
P-val 8E-7
Odds Ratio 1.37 [1.19-1.58]

The second strongest signal was provided by rs10054504 which maps to chromosome 5p13.3 (32 000 483 bps; NCBI build 37), within intron 4 of the PDZD2 gene (PDZ domain-containing 2; MIM: 610697), but did not achieve genome-wide significance (P = 7.68 × 10−7; Phet = 0.06, I2 = 57%)[PMID 23184150OA-icon.png]