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rs10401969

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(T;T) 0 common in complete genomics
Make rs10401969(C;C)
Make rs10401969(C;T)
ReferenceGRCh38 38.1/141
Chromosome19
Position19296909
GeneSUGP1
is asnp
is mentioned by
dbSNPrs10401969
ebirs10401969
HLIrs10401969
Exacrs10401969
Varsomers10401969
Maprs10401969
PheGenIrs10401969
hapmaprs10401969
1000 genomesrs10401969
hgdprs10401969
ensemblrs10401969
gopubmedrs10401969
geneviewrs10401969
scholarrs10401969
googlers10401969
pharmgkbrs10401969
gwascentralrs10401969
openSNPrs10401969
23andMers10401969
23andMe allrs10401969
SNP Nexus

SNPshotrs10401969
SNPdbers10401969
MSV3drs10401969
GWAS Ctlgrs10401969
GMAF0.1065
Max Magnitude0
? (C;C) (C;T) (T;T) 28
GWAS snp
PMID [PMID 19060906OA-icon.png]
Trait LDL cholesterol
Title Common variants at 30 loci contribute to polygenic dyslipidemia
Risk Allele C
P-val 2E-8
Odds Ratio 0.05 [-0.03-0.13] SD decrease


GWAS snp
PMID [PMID 20864672OA-icon.png]
Trait
Title Genetic Variants Influencing Circulating Lipid Levels and Risk of Coronary Artery Disease
Risk Allele T
P-val 1E-11
Odds Ratio 0.05 [0.04-0.06] unit increase
GWAS snp
PMID [PMID 20686565OA-icon.png]
Trait
Title Biological, clinical and population relevance of 95 loci for blood lipids.
Risk Allele C
P-val 2E-29
Odds Ratio 7.8300 None


[PMID 19656773OA-icon.png] A polygenic basis for four classical Fredrickson hyperlipoproteinemia phenotypes that are characterized by hypertriglyceridemia.


[PMID 19951432OA-icon.png] Analysis of recently identified dyslipidemia alleles reveals two loci that contribute to risk for carotid artery disease.


GET Evidence
rs10401969
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency
summary



[PMID 23119086OA-icon.png] Variants Identified in a GWAS Meta-Analysis for Blood Lipids Are Associated with the Lipid Response to Fenofibrate


[PMID 23092954OA-icon.png] SHAVE: shrinkage estimator measured for multiple visits increases power in GWAS of quantitative traits.

GWAS snp
PMID [PMID 24097068OA-icon.png]
Trait Cholesterol, total
Title Discovery and refinement of loci associated with lipid levels.
Risk Allele C
P-val 4E-77
Odds Ratio .14 [NR] unit decrease


[PMID 25951451OA-icon.png] Replication Study in a Japanese Population to Evaluate the Association between 10 SNP Loci, Identified in European Genome-Wide Association Studies, and Type 2 Diabetes