Have questions? Visit https://www.reddit.com/r/SNPedia

rs1132200

From SNPedia

Orientationminus
Stabilizedminus
Geno Mag Summary
(G;G) 0 common on affy axiom data
Make rs1132200(A;A)
Make rs1132200(A;G)
ReferenceGRCh38 38.1/141
Chromosome3
Position119431989
GeneTMEM39A
is asnp
is mentioned by
dbSNPrs1132200
ebirs1132200
HLIrs1132200
Exacrs1132200
Varsomers1132200
Maprs1132200
PheGenIrs1132200
hapmaprs1132200
1000 genomesrs1132200
hgdprs1132200
ensemblrs1132200
gopubmedrs1132200
geneviewrs1132200
scholarrs1132200
googlers1132200
pharmgkbrs1132200
gwascentralrs1132200
openSNPrs1132200
23andMers1132200
23andMe allrs1132200
SNP Nexus

SNPshotrs1132200
SNPdbers1132200
MSV3drs1132200
GWAS Ctlgrs1132200
GMAF0.08678
Max Magnitude0
? (A;A) (A;G) (G;G) 28
[PMID 20007504OA-icon.png] Comprehensive follow-up of the first genome-wide association study of multiple sclerosis identifies KIF21B and TMEM39A as susceptibility loci


[PMID 22464253OA-icon.png] Identification of IRF8, TMEM39A, and IKZF3-ZPBP2 as susceptibility loci for systemic lupus erythematosus in a large-scale multiracial replication study


[PMID 20041220OA-icon.png] Autoimmune disease classification by inverse association with SNP alleles.


[PMID 20405052OA-icon.png] The effect of single nucleotide polymorphisms from genome wide association studies in multiple sclerosis on gene expression.


GET Evidence
TMEM39A-A487T
aa_change Ala487Thr
aa_change_short A487T
impact not reviewed
qualified_impact Insufficiently evaluated not reviewed
overall_frequency 0.116307
summary



[PMID 22194214] Replication study of 10 genes showing evidence for association with multiple sclerosis: validation of TMEM39A, IL12B and CBLB [correction of CLBL] genes


[PMID 25720506] Autoimmune risk loci of IL12RB2, IKZF1, XKR6, TMEM39A and CSK in Chinese patients with systemic lupus erythematosus