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rs11966200

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(C;C) 0 common on affy axiom data
(C;T) 1.88x risk of vitiligo
(T;T) 1.88x risk of vitiligo
ReferenceGRCh38 38.1/141
Chromosome6
Position31869289
GeneSLC44A4
is asnp
is mentioned by
dbSNPrs11966200
ebirs11966200
HLIrs11966200
Exacrs11966200
Varsomers11966200
Maprs11966200
PheGenIrs11966200
hapmaprs11966200
1000 genomesrs11966200
hgdprs11966200
ensemblrs11966200
gopubmedrs11966200
geneviewrs11966200
scholarrs11966200
googlers11966200
pharmgkbrs11966200
gwascentralrs11966200
openSNPrs11966200
23andMers11966200
23andMe allrs11966200
SNP Nexus

SNPshotrs11966200
SNPdbers11966200
MSV3drs11966200
GWAS Ctlgrs11966200
GMAF0.04591
Max Magnitude0
? (C;C) (C;T) (T;T) 28
GWAS snp
PMID [PMID 20526339]
Trait Vitiligo
Title Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC
Risk Allele A
P-val 1E-48
Odds Ratio 1.90 [1.74-2.07]
OMIM193200
Desc
Variant
Relatedalso


[PMID 23516070] The association between a single nucleotide polymorphism rs11966200 in MHC region and clinical features of generalized vitiligo in Chinese Han population