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rs11983225

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(C;C) 1 7x more likely to respond to certain antidepressants
(C;T) 1 7x more likely to respond to certain antidepressants
(T;T) 2 7x less likely to respond to certain antidepressants
ReferenceGRCh38 38.1/141
Chromosome7
Position87532204
GeneABCB1
is asnp
is mentioned by
dbSNPrs11983225
ebirs11983225
HLIrs11983225
Exacrs11983225
Varsomers11983225
Maprs11983225
PheGenIrs11983225
hapmaprs11983225
1000 genomesrs11983225
hgdprs11983225
ensemblrs11983225
gopubmedrs11983225
geneviewrs11983225
scholarrs11983225
googlers11983225
pharmgkbrs11983225
gwascentralrs11983225
openSNPrs11983225
23andMers11983225
23andMe allrs11983225
SNP Nexus

SNPshotrs11983225
SNPdbers11983225
MSV3drs11983225
GWAS Ctlgrs11983225
GMAF0.1318
Max Magnitude2
? (C;C) (C;T) (T;T) 28
rs11983225 is a SNP in the ABCB1 gene (also known as the MDR1 gene), which encodes a protein that transports certain molecules across the blood-brain barrier. SNPs in ABCB1 may thus influence the intracerebral concentrations of certain drugs and thus their efficacy or potential for adverse side effects.


rs11983225 is one of 9 SNPs found within a tight linkage block (r2 >= 0.8 ) such that the minor allele at any one of them predicts (with ~80%+ accuracy) that the other SNPs will also be the minor allele. The list of the 9 SNPs is shown below.

When treated for depression with substrates of the protein encoded by ABCB1, carriers of one or two minor alleles at these ABCB1 SNPs have been reported to respond better than non-carriers. The antidepressant drugs that are known to be substrates include citalopram, paroxetine, amitriptyline, and venlafaxine. The relative odds of better response for rs11983225(T) carriers is 7.72 (CI: 2.8-21.3, p=0.000065) based on a study of ~400 primarily Caucasian patients.10.1016/j.neuron.2007.11.017

The 9 SNPs in the linkage block identified are 10.1016/j.neuron.2007.11.017:


Neighborrs4148739
Distance471
[PMID 15197162OA-icon.png] Identifying candidate causal variants responsible for altered activity of the ABCB1 multidrug resistance gene.


GET Evidence
rs11983225
aa_change
aa_change_short
impact pharmacogenetic
qualified_impact Insufficiently evaluated pharmacogenetic
overall_frequency 0.148438
summary