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rs12653946

From SNPedia

Orientationplus
Stabilizedplus
Make rs12653946(C;C)
Make rs12653946(C;T)
Make rs12653946(T;T)
ReferenceGRCh38 38.1/141
Chromosome5
Position1895715
GeneCTD-2194D22.4
is asnp
is mentioned by
dbSNPrs12653946
ebirs12653946
HLIrs12653946
Exacrs12653946
Varsomers12653946
Maprs12653946
PheGenIrs12653946
hapmaprs12653946
1000 genomesrs12653946
hgdprs12653946
ensemblrs12653946
gopubmedrs12653946
geneviewrs12653946
scholarrs12653946
googlers12653946
pharmgkbrs12653946
gwascentralrs12653946
openSNPrs12653946
23andMers12653946
23andMe allrs12653946
SNP Nexus

SNPshotrs12653946
SNPdbers12653946
MSV3drs12653946
GWAS Ctlgrs12653946
GMAF0.4233
Max Magnitude
? (C;C) (C;T) (T;T) 28
GWAS snp
PMID [PMID 20676098]
Trait
Title Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population
Risk Allele T
P-val 4E-18
Odds Ratio 1.26 [1.20-1.33]


[PMID 22056501OA-icon.png] Replication of five prostate cancer loci identified in an Asian population - Results from the NCI Breast and Prostate Cancer Cohort Consortium (BPC3)


[PMID 22085625] A Replication Study Examining Novel Common Single Nucleotide Polymorphisms Identified Through a Prostate Cancer Genome-wide Association Study in a Japanese Population


[PMID 22323358] IRX4 at 5p15 suppresses prostate cancer growth through the interaction with vitamin D receptor, conferring prostate cancer susceptibility.


[PMID 22114074OA-icon.png] Replication and cumulative effects of GWAS-identified genetic variations for prostate cancer in Asians: a case-control study in the ChinaPCa consortium.


[PMID 22662242OA-icon.png] Replication and fine mapping for association of the C2orf43, FOXP4, GPRC6A and RFX6 genes with prostate cancer in the Chinese population


[PMID 23405784] [Susceptibility to prostate cancer in Han Chinese: single nucleotide polymorphism analysis of 1 667 cases]

GWAS snp
PMID [PMID 22923026OA-icon.png]
Trait Prostate cancer
Title Evaluating genetic risk for prostate cancer among Japanese and Latinos.
Risk Allele T
P-val 3E-7
Odds Ratio 1.39 [1.22-1.57]


[PMID 23620269] Genetic variants in 2q31 and 5p15 are associated with aggressive benign prostatic hyperplasia in a Chinese population.