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rs13107325

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(C;C) 0
Make rs13107325(C;T)
Make rs13107325(T;T)
ReferenceGRCh38 38.1/141
Chromosome4
Position102267552
GeneSLC39A8
is asnp
is mentioned by
dbSNPrs13107325
ebirs13107325
HLIrs13107325
Exacrs13107325
Varsomers13107325
Maprs13107325
PheGenIrs13107325
hapmaprs13107325
1000 genomesrs13107325
hgdprs13107325
ensemblrs13107325
gopubmedrs13107325
geneviewrs13107325
scholarrs13107325
googlers13107325
pharmgkbrs13107325
gwascentralrs13107325
openSNPrs13107325
23andMers13107325
23andMe allrs13107325
SNP Nexus

SNPshotrs13107325
SNPdbers13107325
MSV3drs13107325
GWAS Ctlgrs13107325
GMAF0.03444
Max Magnitude0
? (C;C) (C;T) (T;T) 28
GWAS snp
PMID [PMID 20935630OA-icon.png]
Trait
Title Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index
Risk Allele T
P-val 2E-13
Odds Ratio 0.19 [0.11-0.27] kg/m2 increase
GWAS snp
PMID [PMID 21909115OA-icon.png]
Trait
Title Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.
Risk Allele T
P-val 2E-17
Odds Ratio 0.6840 [NR] mmHg decrease
GWAS snp
PMID [PMID 21909110OA-icon.png]
Trait
Title Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.
Risk Allele T
P-val 1E-10
Odds Ratio 0.6330 [0.44-0.82] mmHg decrease
GWAS snp
PMID [PMID 20686565OA-icon.png]
Trait
Title Biological, clinical and population relevance of 95 loci for blood lipids.
Risk Allele T
P-val 7E-11
Odds Ratio 0.8400 None


[PMID 19503599OA-icon.png] The impact of divergence time on the nature of population structure: an example from Iceland.


[PMID 22078303] Association study of nonsynonymous single nucleotide polymorphisms in schizophrenia.


GET Evidence
SLC39A8-A391T
aa_change Ala391Thr
aa_change_short A391T
impact not reviewed
qualified_impact Insufficiently evaluated not reviewed
overall_frequency 0.0582822
summary



[PMID 23471855OA-icon.png] The genetics of childhood obesity and interaction with dietary macronutrients.

GWAS snp
PMID [PMID 24097068OA-icon.png]
Trait HDL cholesterol
Title Discovery and refinement of loci associated with lipid levels.
Risk Allele T
P-val 1E-15
Odds Ratio .07 [NR] unit decrease


[PMID 26006263] Recent Positive Selection Drives the Expansion of a Schizophrenia Risk Nonsynonymous Variant at SLC39A8 in Europeans


[PMID 25184405] Subclinical psychotic experiences in healthy young adults: associations with stress and genetic predisposition


[PMID 26908625] Genome-wide association and Mendelian randomization study of NT-proBNP in patients with acute coronary syndrome.


[PMID 27492617] A pleiotropic missense variant in SLC39A8 is associated with Crohn's disease and human gut microbiome composition.