rs13278062
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (G;G) | 0 | common in clinvar |
| Make rs13278062(G;T) |
| Make rs13278062(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 8 |
| Position | 23225458 |
| Gene | LOC389641, TNFRSF10A |
| is a | snp |
| is | mentioned by |
| dbSNP | rs13278062 |
| dbSNP (classic) | rs13278062 |
| ClinGen | rs13278062 |
| ebi | rs13278062 |
| HLI | rs13278062 |
| Exac | rs13278062 |
| Gnomad | rs13278062 |
| Varsome | rs13278062 |
| LitVar | rs13278062 |
| Map | rs13278062 |
| PheGenI | rs13278062 |
| Biobank | rs13278062 |
| 1000 genomes | rs13278062 |
| hgdp | rs13278062 |
| ensembl | rs13278062 |
| geneview | rs13278062 |
| scholar | rs13278062 |
| rs13278062 | |
| pharmgkb | rs13278062 |
| gwascentral | rs13278062 |
| openSNP | rs13278062 |
| 23andMe | rs13278062 |
| SNPshot | rs13278062 |
| SNPdbe | rs13278062 |
| MSV3d | rs13278062 |
| GWAS Ctlg | rs13278062 |
| GMAF | 0.3994 |
| Max Magnitude | 0 |
| ? | (G;G) (G;T) (T;T) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 21909106] |
| Trait | |
| Title | Genome-wide association study identifies two susceptibility loci for exudative age-related macular degeneration in the Japanese population. |
| Risk Allele | T |
| P-val | 1E-12 |
| Odds Ratio | 1.3700 [1.25-1.49] |
[PMID 22930721] Association of genetic variants on 8p21 and 4q12 with age-related macular degeneration in Asian populations
| GWAS snp | |
|---|---|
| PMID | [PMID 23455636 ]
|
| Trait | Age-related macular degeneration |
| Title | Seven new loci associated with age-related macular degeneration. |
| Risk Allele | T |
| P-val | 3E-15 |
| Odds Ratio | 1.15 [1.12-1.19] |
[PMID 24235014] TNFRSF10A-LOC389641 rs13278062 but not REST-C4orf14 - POLR2B-IGFBP7 rs1713985 was found associated with Age-Related Macular Degeneration in a Chinese Population
| ClinVar | |
|---|---|
| Risk | rs13278062(A;A) rs13278062(T;T) |
| Alt | rs13278062(A;A) rs13278062(T;T) |
| Reference | Rs13278062(G;G) |
| Significance | Untested |
| Disease | not provided |
| Variation | info |
| Gene | TNFRSF10A LOC389641 |
| CLNDBN | not provided |
| Reversed | 0 |
| HGVS | NC_000008.10:g.23082971G>T |
| CLNSRC | |
| CLNACC | RCV000190305.1, |
[PMID 29446085] DR4 mediates the progression, invasion, metastasis and survival of colorectal cancer through the Sp1/NF1 switch axis on genomic locus.
