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rs1558744

From SNPedia

Orientationplus
Stabilizedplus
Make rs1558744(A;A)
Make rs1558744(A;G)
Make rs1558744(G;G)
ReferenceGRCh38 38.1/141
Chromosome12
Position68110812
is asnp
is mentioned by
dbSNPrs1558744
ebirs1558744
HLIrs1558744
Exacrs1558744
Varsomers1558744
Maprs1558744
PheGenIrs1558744
hapmaprs1558744
1000 genomesrs1558744
hgdprs1558744
ensemblrs1558744
gopubmedrs1558744
geneviewrs1558744
scholarrs1558744
googlers1558744
pharmgkbrs1558744
gwascentralrs1558744
openSNPrs1558744
23andMers1558744
23andMe allrs1558744
SNP Nexus

SNPshotrs1558744
SNPdbers1558744
MSV3drs1558744
GWAS Ctlgrs1558744
GMAF0.3292
Max Magnitude
? (A;A) (A;G) (G;G) 28
A genome-wide association study using DNA samples from 1,052 individuals with ulcerative colitis and preexisting data from 2,571 controls, all of European ancestry, concluded that this SNP and several others were associated with altered risk for the disease.[PMID 19122664OA-icon.png]
OMIM612639
DescINFLAMMATORY BOWEL DISEASE 26; IBD26
Variant
Relatedalso


GWAS snp
PMID [PMID 20228799OA-icon.png]
Trait Ulcerative colitis
Title Genome-wide association identifies multiple ulcerative colitis susceptibility loci
Risk Allele A
P-val 4E-12
Odds Ratio 1.16 [NR]


[PMID 21304977OA-icon.png] An investigation of genome-wide studies reported susceptibility loci for ulcerative colitis shows limited replication in north Indians.


GET Evidence
rs1558744
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.365079
summary