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rs1574192

From SNPedia

Orientationminus
Stabilizedminus
Make rs1574192(C;C)
Make rs1574192(C;T)
Make rs1574192(T;T)
ReferenceGRCh38 38.1/141
Chromosome2
Position240369088
is asnp
is mentioned by
dbSNPrs1574192
ebirs1574192
HLIrs1574192
Exacrs1574192
Varsomers1574192
Maprs1574192
PheGenIrs1574192
hapmaprs1574192
1000 genomesrs1574192
hgdprs1574192
ensemblrs1574192
gopubmedrs1574192
geneviewrs1574192
scholarrs1574192
googlers1574192
pharmgkbrs1574192
gwascentralrs1574192
openSNPrs1574192
23andMers1574192
23andMe allrs1574192
SNP Nexus

SNPshotrs1574192
SNPdbers1574192
MSV3drs1574192
GWAS Ctlgrs1574192
GMAF0.2062
Max Magnitude
? (C;C) (C;T) (T;T) 28
GWAS snp
PMID [PMID 19023125OA-icon.png]
Trait Brain imaging in schizophrenia (interaction)
Title A Genome-Wide Association Study of Schizophrenia Using Brain Activation as a Quantitative Phenotype
Risk Allele
P-val 0.000004
Odds Ratio NR NR

[PMID 19023125OA-icon.png] less than 10^-6 p-value interaction with quantitative trait (mean oxygen level-dependent signal in the DLPFC while performing a working memory task [SIRP]) measured (among 64 subjects with schizophrenia and 74 matched controls) - GPC1 and ROBO2-ROBO1 involved in dorsal forebrain development inc. neural precursor migration, axonal connectivity, midline crossing, and axonal guidance

in close proximity to GPC1



GET Evidence
rs1574192
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.164062
summary