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rs1635852

From SNPedia

Orientationplus
Stabilizedplus
Make rs1635852(C;C)
Make rs1635852(C;T)
Make rs1635852(T;T)
ReferenceGRCh38 38.1/141
Chromosome7
Position28149792
GeneJAZF1
is asnp
is mentioned by
dbSNPrs1635852
ebirs1635852
HLIrs1635852
Exacrs1635852
Varsomers1635852
Maprs1635852
PheGenIrs1635852
hapmaprs1635852
1000 genomesrs1635852
hgdprs1635852
ensemblrs1635852
gopubmedrs1635852
geneviewrs1635852
scholarrs1635852
googlers1635852
pharmgkbrs1635852
gwascentralrs1635852
openSNPrs1635852
23andMers1635852
23andMe allrs1635852
SNP Nexus

SNPshotrs1635852
SNPdbers1635852
MSV3drs1635852
GWAS Ctlgrs1635852
GMAF0.3586
Max Magnitude
? (C;C) (C;T) (T;T) 28
GWAS snp
PMID [PMID 18952825OA-icon.png]
Trait Height
Title Common variants in the JAZF1 gene associated with height identified by linkage and genome-wide association analysis
Risk Allele A
P-val 9E-10
Odds Ratio 0.25 [0.17-0.33] cm taller
OMIM612737
DescSTATURE QUANTITATIVE TRAIT LOCUS 17; STQTL17
Variant
Relatedalso
[PMID 18535201OA-icon.png] A genome-wide scan for common genetic variants with a large influence on warfarin maintenance dose.


[PMID 18694974OA-icon.png] Predicting type 2 diabetes based on polymorphisms from genome-wide association studies: a population-based study.


[PMID 19096518OA-icon.png] Novel association of HK1 with glycated hemoglobin in a non-diabetic population: a genome-wide evaluation of 14,618 participants in the Women's Genome Health Study.


[PMID 19341491OA-icon.png] Genome-based prediction of common diseases: methodological considerations for future research.


[PMID 19474294OA-icon.png] Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.


[PMID 21379322OA-icon.png] Risk alleles for systemic lupus erythematosus in a large case-control collection and associations with clinical subphenotypes.


[PMID 21408207OA-icon.png] Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.


GET Evidence
rs1635852
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.351562
summary



GWAS snp
PMID [PMID 23740937OA-icon.png]
Trait Systemic lupus erythematosus and Systemic sclerosis
Title A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.
Risk Allele
P-val 2E-8
Odds Ratio 1.14 [NR]


[PMID 23328127OA-icon.png] Allele-specific transcriptional activity at type 2 diabetes-associated single nucleotide polymorphisms in regions of pancreatic islet open chromatin at the JAZF1 locus.