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rs17085007

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(C;C) >1.35x increased risk for ulcerative colitis
(C;T) 1.35x increased risk for ulcerative colitis
(T;T) 1x normal risk for ulcerative colitis
ReferenceGRCh38 38.1/141
Chromosome13
Position26957130
is asnp
is mentioned by
dbSNPrs17085007
ebirs17085007
HLIrs17085007
Exacrs17085007
Varsomers17085007
Maprs17085007
PheGenIrs17085007
hapmaprs17085007
1000 genomesrs17085007
hgdprs17085007
ensemblrs17085007
gopubmedrs17085007
geneviewrs17085007
scholarrs17085007
googlers17085007
pharmgkbrs17085007
gwascentralrs17085007
openSNPrs17085007
23andMers17085007
23andMe allrs17085007
SNP Nexus

SNPshotrs17085007
SNPdbers17085007
MSV3drs17085007
GWAS Ctlgrs17085007
GMAF0.1639
Max Magnitude
? (C;C) (C;T) (T;T) 28

[PMID 19915573] A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population

OMIM612796
Desc
Variant
Relatedalso
GWAS snp
PMID [PMID 21297633OA-icon.png]
Trait
Title Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47
Risk Allele C
P-val 1E-16
Odds Ratio 1.1600 [1.10-1.21]


GET Evidence
rs17085007
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.125
summary



GWAS snp
PMID [PMID 23128233OA-icon.png]
Trait Inflammatory bowel disease
Title Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Risk Allele C
P-val 3E-19
Odds Ratio 1.11 [1.065-1.147]
GWAS snp
PMID [PMID 23511034]
Trait Ulcerative colitis
Title Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.
Risk Allele C
P-val 3E-7
Odds Ratio 1.37 [1.22-1.55]


[PMID 26398853] Identification of Ten Additional Susceptibility Loci for Ulcerative Colitis Through Immunochip Analysis in Koreans