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rs17235409

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(G;G) 0 common in complete genomics
Make rs17235409(A;A)
Make rs17235409(A;G)
ReferenceGRCh38 38.1/141
Chromosome2
Position218395009
GeneSLC11A1
is asnp
is mentioned by
dbSNPrs17235409
ebirs17235409
HLIrs17235409
Exacrs17235409
Varsomers17235409
Maprs17235409
PheGenIrs17235409
hapmaprs17235409
1000 genomesrs17235409
hgdprs17235409
ensemblrs17235409
gopubmedrs17235409
geneviewrs17235409
scholarrs17235409
googlers17235409
pharmgkbrs17235409
gwascentralrs17235409
openSNPrs17235409
23andMers17235409
23andMe allrs17235409
SNP Nexus

SNPshotrs17235409
SNPdbers17235409
MSV3drs17235409
GWAS Ctlgrs17235409
GMAF0.07025
Max Magnitude0
? (A;A) (A;G) (G;G) 28
[PMID 19723394OA-icon.png] No association with tuberculosis
OMIM600266
Desc
Variant0002
Relatedalso
[PMID 21524304OA-icon.png] Evidence of association with type 1 diabetes in the SLC11A1 gene region


ClinVar
Risk rs17235409(A;A)
Alt rs17235409(A;A)
Reference rs17235409(G;G)
Significance Other
Disease Buruli ulcer
Variation info
Gene SLC11A1
CLNDBN Buruli ulcer, susceptibility to
Reversed 0
HGVS NC_000002.11:g.219259732G>A
CLNSRC OMIM Allelic Variant
CLNACC RCV000009814.2,



[PMID 15720714OA-icon.png] Construction and analysis of tag single nucleotide polymorphism maps for six human-mouse orthologous candidate genes in type 1 diabetes.


[PMID 17371589OA-icon.png] Sex- and age-dependent association of SLC11A1 polymorphisms with tuberculosis in Chinese: a case control study.


[PMID 18504650] SLC11A1 polymorphisms are associated with the risk of chronic obstructive pulmonary disease in a Korean population.


[PMID 19055603] NRAMP1 (SLC11A1) gene polymorphisms that correlate with autoimmune versus infectious disease susceptibility in tuberculosis and rheumatoid arthritis.


[PMID 20196868OA-icon.png] Polymorphisms in IL-1beta, vitamin D receptor Fok1, and Toll-like receptor 2 are associated with extrapulmonary tuberculosis.


[PMID 21283567OA-icon.png] SLC11A1 (NRAMP1) polymorphisms and tuberculosis susceptibility: updated systematic review and meta-analysis.


[PMID 22008758] SLC11A1 and VDR gene variants and susceptibility to tuberculosis and disease progression in East India.


GET Evidence
SLC11A1-D543N
aa_change Asp543Asn
aa_change_short D543N
impact not reviewed
qualified_impact Insufficiently evaluated not reviewed
overall_frequency 0.0320811
summary



[PMID 25856512] Genetic variants of SLC11A1 are associated with both autoimmune and infectious diseases: systematic review and meta-analysis