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rs17728338

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(G;G) 0 common in complete genomics
Make rs17728338(A;A)
Make rs17728338(A;G)
ReferenceGRCh38 38.1/141
Chromosome5
Position151098757
GeneANXA6
is asnp
is mentioned by
dbSNPrs17728338
ebirs17728338
HLIrs17728338
Exacrs17728338
Varsomers17728338
Maprs17728338
PheGenIrs17728338
hapmaprs17728338
1000 genomesrs17728338
hgdprs17728338
ensemblrs17728338
gopubmedrs17728338
geneviewrs17728338
scholarrs17728338
googlers17728338
pharmgkbrs17728338
gwascentralrs17728338
openSNPrs17728338
23andMers17728338
23andMe allrs17728338
SNP Nexus

SNPshotrs17728338
SNPdbers17728338
MSV3drs17728338
GWAS Ctlgrs17728338
GMAF0.07759
Max Magnitude0
? (A;A) (A;G) (G;G) 28
GWAS snp
PMID [PMID 19169254OA-icon.png]
Trait Psoriasis
Title Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways
Risk Allele A
P-val 1E-20
Odds Ratio 1.59 None
OMIM612599
DescPSORIASIS SUSCEPTIBILITY 11; PSORS11
Variant
Relatedalso
[PMID 21623003OA-icon.png] Confirmation of TNIP1 and IL23A as susceptibility loci for psoriatic arthritis


[PMID 19262574OA-icon.png] Genome-wide association scan yields new insights into the immunopathogenesis of psoriasis.


GET Evidence
rs17728338
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.0625
summary



[PMID 23252691] Investigation of 20 non-HLA (human leucocyte antigen) psoriasis susceptibility loci in Chinese patients with psoriatic arthritis and psoriasis vulgaris.


[PMID 25182136] Fine mapping of eight psoriasis susceptibility loci


[PMID 27073425] Candidate gene polymorphisms and risk of psoriasis: A pilot study