Have questions? Visit https://www.reddit.com/r/SNPedia

rs1799987

From SNPedia

Orientationplus
Stabilizedplus
Make rs1799987(A;A)
Make rs1799987(A;G)
Make rs1799987(G;G)
ReferenceGRCh38 38.1/141
Chromosome3
Position46370444
GeneCCR5, LOC102724297
is asnp
is mentioned by
dbSNPrs1799987
ebirs1799987
HLIrs1799987
Exacrs1799987
Varsomers1799987
Maprs1799987
PheGenIrs1799987
hapmaprs1799987
1000 genomesrs1799987
hgdprs1799987
ensemblrs1799987
gopubmedrs1799987
geneviewrs1799987
scholarrs1799987
googlers1799987
pharmgkbrs1799987
gwascentralrs1799987
openSNPrs1799987
23andMers1799987
23andMe allrs1799987
SNP Nexus

SNPshotrs1799987
SNPdbers1799987
MSV3drs1799987
GWAS Ctlgrs1799987
GMAF0.4871
Max Magnitude
CCR5 59029G, also known as -2459 [PMID 9742978, PMID 12815099]


[PMID 22146622] Polymorphisms of CCL3L1/CCR5 genes and recurrence of hepatitis B in liver transplant recipients


[PMID 15726497OA-icon.png] Gene-environment interaction effects on the development of immune responses in the 1st year of life.


[PMID 17079285OA-icon.png] Genetic protection against hepatitis B virus conferred by CCR5Delta32: Evidence that CCR5 contributes to viral persistence.


[PMID 17672867OA-icon.png] Polymorphisms in chemokine receptor genes and susceptibility to Kawasaki disease.


[PMID 17984846] Single nucleotide polymorphism of CC chemokine ligand 5 promoter gene in recipients may predict the risk of chronic graft-versus-host disease and its severity after allogeneic transplantation.


[PMID 18182569OA-icon.png] Pharmacogenetics of minimal residual disease response in children with B-precursor acute lymphoblastic leukemia: a report from the Children's Oncology Group.


[PMID 18633107OA-icon.png] G/T substitution in intron 1 of the UNC13B gene is associated with increased risk of nephropathy in patients with type 1 diabetes.


[PMID 19131662OA-icon.png] A meta-analysis of candidate gene polymorphisms and ischemic stroke in 6 study populations: association of lymphotoxin-alpha in nonhypertensive patients.


[PMID 19225544OA-icon.png] Variation in the lymphotoxin-alpha/tumor necrosis factor locus modifies risk of erythema nodosum in sarcoidosis.


[PMID 19263529OA-icon.png] Genetic risk factors in recurrent venous thromboembolism: A multilocus, population-based, prospective approach.


[PMID 19330901OA-icon.png] Association of 77 polymorphisms in 52 candidate genes with blood pressure progression and incident hypertension: the Women's Genome Health Study.


[PMID 19559392OA-icon.png] A candidate gene association study of 77 polymorphisms in migraine.


[PMID 20031567OA-icon.png] An evaluation of candidate genes of inflammation and thrombosis in relation to the risk of venous thromboembolism: The Women's Genome Health Study.


[PMID 20206716OA-icon.png] Genetic variation within the gene encoding the HIV-1 CCR5 coreceptor in two South African populations.


[PMID 20487506OA-icon.png] A whole genome association study of mother-to-child transmission of HIV in Malawi.


[PMID 20552027OA-icon.png] Host and viral genetic correlates of clinical definitions of HIV-1 disease progression.


[PMID 21091093OA-icon.png] Polymorphisms in chemokine and receptor genes and gastric cancer risk and survival in a high risk Polish population.


[PMID 22924548] CCR5 gene polymorphism is a genetic risk factor for radiographic severity of rheumatoid arthritis.


ClinVar
Risk rs1799987(G;G)
Alt rs1799987(G;G)
Reference rs1799987(A;A)
Significance Other
Disease Acquired immunodeficiency syndrome CCR5 PROMOTER POLYMORPHISM Human immunodeficiency virus type 1
Variation info
Gene LOC102724297 CCR5
CLNDBN Acquired immunodeficiency syndrome, delayed progression to CCR5 PROMOTER POLYMORPHISM Human immunodeficiency virus type 1, susceptibility to
Reversed 0
HGVS NC_000003.11:g.46411935A>G
CLNSRC OMIM Allelic Variant
CLNACC RCV000008671.2, RCV000008674.2, RCV000008675.4,