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rs2156552

From SNPedia

Orientationminus
Stabilizedminus
Geno Mag Summary
(A;A) 0 common on affy axiom data
Make rs2156552(A;T)
Make rs2156552(T;T)
ReferenceGRCh38 38.1/141
Chromosome18
Position49655298
is asnp
is mentioned by
dbSNPrs2156552
ebirs2156552
HLIrs2156552
Exacrs2156552
Varsomers2156552
Maprs2156552
PheGenIrs2156552
hapmaprs2156552
1000 genomesrs2156552
hgdprs2156552
ensemblrs2156552
gopubmedrs2156552
geneviewrs2156552
scholarrs2156552
googlers2156552
pharmgkbrs2156552
gwascentralrs2156552
openSNPrs2156552
23andMers2156552
23andMe allrs2156552
SNP Nexus

SNPshotrs2156552
SNPdbers2156552
MSV3drs2156552
GWAS Ctlgrs2156552
GMAF0.129
Max Magnitude0
? (A;A) (A;T) (T;T) 28
GWAS snp
PMID [PMID 18193044OA-icon.png]
Trait HDL cholesterol
Title Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans
Risk Allele A
P-val 1.9999999999999999E-7
Odds Ratio 0.07 [0.05-0.09]% SD lower
GWAS snp
PMID [PMID 18193043]
Trait HDL cholesterol
Title Newly identified loci that influence lipid concentrations and risk of coronary artery disease
Risk Allele T
P-val 6.0000000000000003E-12
Odds Ratio 1.20 [NR] mg/dl higher
GWAS snp
PMID [PMID 20864672OA-icon.png]
Trait
Title Genetic Variants Influencing Circulating Lipid Levels and Risk of Coronary Artery Disease
Risk Allele T
P-val 2E-12
Odds Ratio 0.03 [0.02-0.04] unit increase


[PMID 18852197OA-icon.png] Metabolic and cardiovascular traits: an abundance of recently identified common genetic variants.


[PMID 19041386OA-icon.png] Genetic-epidemiological evidence on genes associated with HDL cholesterol levels: a systematic in-depth review.


[PMID 19060910OA-icon.png] Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.


[PMID 19148283OA-icon.png] Genetic differences between the determinants of lipid profile phenotypes in African and European Americans: the Jackson Heart Study.


[PMID 19185284OA-icon.png] Common variation in the beta-carotene 15,15'-monooxygenase 1 gene affects circulating levels of carotenoids: a genome-wide association study.


[PMID 19197348OA-icon.png] Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.


[PMID 19287092OA-icon.png] Loss-of-function variants in endothelial lipase are a cause of elevated HDL cholesterol in humans.


[PMID 19435741OA-icon.png] Common lipid-altering gene variants are associated with therapeutic intervention thresholds of lipid levels in older people.


[PMID 20370913OA-icon.png] Genome-wide association analysis of total cholesterol and high-density lipoprotein cholesterol levels using the Framingham heart study data.


GET Evidence
rs2156552
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.890625
summary