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rs2241879

From SNPedia

Orientationminus
Stabilizedminus
Make rs2241879(C;C)
Make rs2241879(C;T)
Make rs2241879(T;T)
ReferenceGRCh38 38.1/141
Chromosome2
Position233274822
GeneATG16L1, SCARNA5
is asnp
is mentioned by
dbSNPrs2241879
ebirs2241879
HLIrs2241879
Exacrs2241879
Varsomers2241879
Maprs2241879
PheGenIrs2241879
hapmaprs2241879
1000 genomesrs2241879
hgdprs2241879
ensemblrs2241879
gopubmedrs2241879
geneviewrs2241879
scholarrs2241879
googlers2241879
pharmgkbrs2241879
gwascentralrs2241879
openSNPrs2241879
23andMers2241879
23andMe allrs2241879
SNP Nexus

SNPshotrs2241879
SNPdbers2241879
MSV3drs2241879
GWAS Ctlgrs2241879
GMAF0.3889
Max Magnitude
? (C;C) (C;T) (T;T) 28
rs2241879 has been associated with Crohn's disease; the minor allele is somewhat protective in that it lessens the odds of acquiring the disease (odds ratio 0.74, CI: 0.65-0.84, p=3.6x10e-6).[PMID 18162085]
Neighborrs2241880
Distance100


[PMID 21206965] IL23R, NOD2/CARD15, ATG16L1 and PHOX2B polymorphisms in a group of patients with Crohn's disease and correlation with sub-phenotypes


[PMID 21513755] ATG16L1 gene polymorphisms are associated with palmoplantar pustulosis


[PMID 18698678OA-icon.png] Replication of interleukin 23 receptor and autophagy-related 16-like 1 association in adult- and pediatric-onset inflammatory bowel disease in Italy.


[PMID 19916168OA-icon.png] Genome-wide association studies--a summary for the clinical gastroenterologist.


[PMID 20066736OA-icon.png] Interaction of the major inflammatory bowel disease susceptibility alleles in Crohn's disease patients.


[PMID 20082483OA-icon.png] NOD2, IL23R and ATG16L1 polymorphisms in Lithuanian patients with inflammatory bowel disease.


[PMID 20195480OA-icon.png] The cannabinoid 1 receptor (CNR1) 1359 G/A polymorphism modulates susceptibility to ulcerative colitis and the phenotype in Crohn's disease.


[PMID 20222171OA-icon.png] T300A polymorphism of ATG16L1 and susceptibility to inflammatory bowel diseases: a meta-analysis.


[PMID 20380008OA-icon.png] NOD2/CARD15, ATG16L1 and IL23R gene polymorphisms and childhood-onset of Crohn's disease.


[PMID 20454450OA-icon.png] Evidence for STAT4 as a common autoimmune gene: rs7574865 is associated with colonic Crohn's disease and early disease onset.