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rs2305089

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(T;T) 1.5 higher risk for chordoma reported in one study; no association seen in another study
Make rs2305089(C;C)
Make rs2305089(C;T)
ReferenceGRCh38 38.1/141
Chromosome6
Position166165782
GeneT
is asnp
is mentioned by
dbSNPrs2305089
dbSNP (classic)rs2305089
ClinGenrs2305089
ebirs2305089
HLIrs2305089
Exacrs2305089
Gnomadrs2305089
Varsomers2305089
LitVarrs2305089
Maprs2305089
PheGenIrs2305089
Biobankrs2305089
1000 genomesrs2305089
hgdprs2305089
ensemblrs2305089
geneviewrs2305089
scholarrs2305089
googlers2305089
pharmgkbrs2305089
gwascentralrs2305089
openSNPrs2305089
23andMers2305089
SNPshotrs2305089
SNPdbers2305089
MSV3drs2305089
GWAS Ctlgrs2305089
GMAF0.3903
Max Magnitude1.5

A small study (40 patients) reported in 2012 that rs2305089(T), also knownn as Gly177Asp, was associated with chordoma development, reporting an odds ratio of 6.1 (CI: 3.1-12.1, p = 4.4 × 10e-9).{PMID|23064415}}

However, a 2013 study of 65 skull-base chordoma cases among Chinese patients found no association with rs2305089.[PMID 24232574OA-icon.png]

? (C;C) (C;T) (T;T) 28




[PMID 26435504] T gene isoform expression pattern is significantly different between chordomas and notochords


[PMID 27663388OA-icon.png] Spinal column chordoma: prognostic significance of clinical variables and T (brachyury) gene SNP rs2305089 for local recurrence and overall survival.