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rs2517713

From SNPedia

Orientationminus
Stabilizedminus
Make rs2517713(A;A)
Make rs2517713(A;C)
Make rs2517713(C;C)
ReferenceGRCh38 38.1/141
Chromosome6
Position29950322
GeneHCP5P3
is asnp
is mentioned by
dbSNPrs2517713
ebirs2517713
HLIrs2517713
Exacrs2517713
Varsomers2517713
Maprs2517713
PheGenIrs2517713
hapmaprs2517713
1000 genomesrs2517713
hgdprs2517713
ensemblrs2517713
gopubmedrs2517713
geneviewrs2517713
scholarrs2517713
googlers2517713
pharmgkbrs2517713
gwascentralrs2517713
openSNPrs2517713
23andMers2517713
23andMe allrs2517713
SNP Nexus

SNPshotrs2517713
SNPdbers2517713
MSV3drs2517713
GWAS Ctlgrs2517713
GMAF0.3237
Max Magnitude
? (A;A) (A;C) (C;C) 28
GWAS snp
PMID [PMID 19664746OA-icon.png]
Trait Nasopharyngeal Carcinoma
Title Genome-wide Association Study Reveals Multiple Nasopharyngeal Carcinoma-Associated Loci within the HLA Region at Chromosome 6p21.
Risk Allele A
P-val 4E-20
Odds Ratio 1.88 [1.65-2.15]
OMIM161550
Desc
Variant
Relatedalso
[PMID 18519066OA-icon.png] Detection, imputation, and association analysis of small deletions and null alleles on oligonucleotide arrays.

[PMID 21283797OA-icon.png] Identification of genes with allelic imbalance on 6p associated with nasopharyngeal carcinoma in southern Chinese.


GET Evidence
rs2517713
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.579365
summary



[PMID 26307051OA-icon.png] Heterogeneity revealed through meta-analysis might link geographical differences with nasopharyngeal carcinoma incidence in Han Chinese populations