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rs2523393

From SNPedia

Orientationminus
Stabilizedminus
Make rs2523393(C;C)
Make rs2523393(C;T)
Make rs2523393(T;T)
ReferenceGRCh38 38.1/141
Chromosome6
Position29737882
GeneHLA-F-AS1
is asnp
is mentioned by
dbSNPrs2523393
ebirs2523393
HLIrs2523393
Exacrs2523393
Varsomers2523393
Maprs2523393
PheGenIrs2523393
hapmaprs2523393
1000 genomesrs2523393
hgdprs2523393
ensemblrs2523393
gopubmedrs2523393
geneviewrs2523393
scholarrs2523393
googlers2523393
pharmgkbrs2523393
gwascentralrs2523393
openSNPrs2523393
23andMers2523393
23andMe allrs2523393
SNP Nexus

SNPshotrs2523393
SNPdbers2523393
MSV3drs2523393
GWAS Ctlgrs2523393
GMAF0.3944
Max Magnitude
? (C;C) (C;T) (T;T) 28
GWAS snp
PMID [PMID 19525953OA-icon.png]
Trait Multiple sclerosis
Title Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci
Risk Allele A
P-val 1E-17
Odds Ratio 1.28 [1.18-1.39]

[PMID 20405052OA-icon.png] The effect of single nucleotide polymorphisms from genome wide association studies in multiple sclerosis on gene expression.

[PMID 20593013OA-icon.png] A major histocompatibility Class I locus contributes to multiple sclerosis susceptibility independently from HLA-DRB1*15:01.


GET Evidence
rs2523393
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.3125
summary