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rs2836754

From SNPedia

Orientationplus
Stabilizedplus
Make rs2836754(C;C)
Make rs2836754(C;T)
Make rs2836754(T;T)
ReferenceGRCh38 38.1/141
Chromosome21
Position38919816
GeneSLC36A4
is asnp
is mentioned by
dbSNPrs2836754
ebirs2836754
HLIrs2836754
Exacrs2836754
Varsomers2836754
Maprs2836754
PheGenIrs2836754
hapmaprs2836754
1000 genomesrs2836754
hgdprs2836754
ensemblrs2836754
gopubmedrs2836754
geneviewrs2836754
scholarrs2836754
googlers2836754
pharmgkbrs2836754
gwascentralrs2836754
openSNPrs2836754
23andMers2836754
23andMe allrs2836754
SNP Nexus

SNPshotrs2836754
SNPdbers2836754
MSV3drs2836754
GWAS Ctlgrs2836754
GMAF0.4302
Max Magnitude
? (C;C) (C;T) (T;T) 28
GWAS snp
PMID [PMID 17554261OA-icon.png]
Trait Crohn's disease
Title Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility
Risk Allele
P-val 4.9999999999999998E-7
Odds Ratio 1.15 [1.03-1.28]


[PMID 18438406OA-icon.png] Genetic determinants of ulcerative colitis include the ECM1 locus and five loci implicated in Crohn's disease.


[PMID 18853133OA-icon.png] Gene variants influencing measures of inflammation or predisposing to autoimmune and inflammatory diseases are not associated with the risk of type 2 diabetes.


[PMID 19140132OA-icon.png] Unbiased estimation of odds ratios: combining genomewide association scans with replication studies.


GET Evidence
rs2836754
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.40625
summary