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rs28777

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(A;A) 0 common in complete genomics
Make rs28777(A;C)
Make rs28777(C;C)
ReferenceGRCh38 38.1/141
Chromosome5
Position33958854
GeneSLC45A2
is asnp
is mentioned by
dbSNPrs28777
ebirs28777
HLIrs28777
Exacrs28777
Varsomers28777
Maprs28777
PheGenIrs28777
hapmaprs28777
1000 genomesrs28777
hgdprs28777
ensemblrs28777
gopubmedrs28777
geneviewrs28777
scholarrs28777
googlers28777
pharmgkbrs28777
gwascentralrs28777
openSNPrs28777
23andMers28777
23andMe allrs28777
SNP Nexus

SNPshotrs28777
SNPdbers28777
MSV3drs28777
GWAS Ctlgrs28777
GMAF0.4894
Max Magnitude0
? (A;A) (A;C) (C;C) 28
GWAS
SNP rs28777
PubMedID [PMID 18483556OA-icon.png]
Condition Black vs. red hair color
Gene MATP
Risk Allele C
pValue 9.00E-014
OR 0.46
95% CI 0.34-0.58) decrease in hair color scor



[PMID 19710684OA-icon.png] Multiple pigmentation gene polymorphisms account for a substantial proportion of risk of cutaneous malignant melanoma



[PMID 19340012OA-icon.png] Genome-wide association study of tanning phenotype in a population of European ancestry.


[PMID 21253569OA-icon.png] Genome-wide association study SNPs in the human genome diversity project populations: does selection affect unlinked SNPs with shared trait associations?


GET Evidence
rs28777
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.460317
summary



[PMID 23543094OA-icon.png] Testing for associations between loci and environmental gradients using latent factor mixed models.