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rs28927680

From SNPedia

Orientationminus
Stabilizedminus
Make rs28927680(C;C)
Make rs28927680(C;G)
Make rs28927680(G;G)
ReferenceGRCh38 38.1/141
Chromosome11
Position116748357
GeneBUD13
is asnp
is mentioned by
dbSNPrs28927680
ebirs28927680
HLIrs28927680
Exacrs28927680
Varsomers28927680
Maprs28927680
PheGenIrs28927680
hapmaprs28927680
1000 genomesrs28927680
hgdprs28927680
ensemblrs28927680
gopubmedrs28927680
geneviewrs28927680
scholarrs28927680
googlers28927680
pharmgkbrs28927680
gwascentralrs28927680
openSNPrs28927680
23andMers28927680
23andMe allrs28927680
SNP Nexus

SNPshotrs28927680
SNPdbers28927680
MSV3drs28927680
GWAS Ctlgrs28927680
GMAF0.07897
Max Magnitude
? (C;C) (C;G) (G;G) 28
GWAS snp
PMID [PMID 18193044OA-icon.png]
Trait Triglycerides
Title Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans
Risk Allele G
P-val 2.0000000000000001E-17
Odds Ratio 0.26 [0.20-0.32]% SD higher


[PMID 19041386OA-icon.png] Genetic-epidemiological evidence on genes associated with HDL cholesterol levels: a systematic in-depth review.


[PMID 19060910OA-icon.png] Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.


[PMID 19656773OA-icon.png] A polygenic basis for four classical Fredrickson hyperlipoproteinemia phenotypes that are characterized by hypertriglyceridemia.


[PMID 20018036OA-icon.png] Using a latent growth curve model for an integrative assessment of the effects of genetic and environmental factors on multiple phenotypes.


GET Evidence
rs28927680
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.078125
summary



GWAS snp
PMID [PMID 24023261OA-icon.png]
Trait Lipid traits
Title THOC5: a novel gene involved in HDL-cholesterol metabolism.
Risk Allele G
P-val 3E-7
Odds Ratio .22 unit increase