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rs3117582

From SNPedia

Orientationminus
Stabilizedminus
Geno Mag Summary
(A;A) 0 common on affy axiom data
(C;C) 2 increased lung cancer risk
Make rs3117582(A;C)
ReferenceGRCh38 38.1/141
Chromosome6
Position31652743
GeneBAG6
is asnp
is mentioned by
dbSNPrs3117582
ebirs3117582
HLIrs3117582
Exacrs3117582
Varsomers3117582
Maprs3117582
PheGenIrs3117582
hapmaprs3117582
1000 genomesrs3117582
hgdprs3117582
ensemblrs3117582
gopubmedrs3117582
geneviewrs3117582
scholarrs3117582
googlers3117582
pharmgkbrs3117582
gwascentralrs3117582
openSNPrs3117582
23andMers3117582
23andMe allrs3117582
SNP Nexus

SNPshotrs3117582
SNPdbers3117582
MSV3drs3117582
GWAS Ctlgrs3117582
GMAF0.03857
Max Magnitude2
? (A;A) (A;C) (C;C) 28
[PMID 18978787OA-icon.png] lung cancer rs3117582 P = 4.97 x 10(-10)
OMIM612593
DescLUNG CANCER SUSCEPTIBILITY 4; LNCR4
Variant
Relatedalso
[PMID 19654303OA-icon.png] Deciphering the Impact of Common Genetic Variation on Lung Cancer Risk: A Genome-Wide Association Study
GWAS snp
PMID [PMID 19836008OA-icon.png]
Trait Lung adenocarcinoma
Title A Genome-wide Association Study of Lung Cancer Identifies a Region of Chromosome 5p15 Associated with Risk for Adenocarcinoma
Risk Allele C
P-val 5E-12
Odds Ratio 1.22 [1.15-1.29]



[PMID 20142248OA-icon.png] Cumulative effect of multiple Loci on genetic susceptibility to familial lung cancer



[PMID 19423719OA-icon.png] Update in lung cancer 2008.

[PMID 19474294OA-icon.png] Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

[PMID 19955392] Role of 5p15.33 (TERT-CLPTM1L), 6p21.33 and 15q25.1 (CHRNA5-CHRNA3) variation and lung cancer risk in never-smokers.


[PMID 25231575] Susceptibility to large-joint osteoarthritis (hip and knee) is associated with BAG6 rs3117582 SNP and the VNTR polymorphism in the second exon of the FAM46A gene on chromosome 6


[PMID 25884493OA-icon.png] Association of the FAM46A Gene VNTRs and BAG6 rs3117582 SNP with Non Small Cell Lung Cancer (NSCLC) in Croatian and Norwegian Populations