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rs3131379

From SNPedia

Orientationminus
Stabilizedminus
Geno Mag Summary
(C;C) 0 common on affy axiom data
Make rs3131379(C;T)
Make rs3131379(T;T)
ReferenceGRCh38 38.1/141
Chromosome6
Position31753256
GeneMSH5, MSH5-SAPCD1
is asnp
is mentioned by
dbSNPrs3131379
ebirs3131379
HLIrs3131379
Exacrs3131379
Varsomers3131379
Maprs3131379
PheGenIrs3131379
hapmaprs3131379
1000 genomesrs3131379
hgdprs3131379
ensemblrs3131379
gopubmedrs3131379
geneviewrs3131379
scholarrs3131379
googlers3131379
pharmgkbrs3131379
gwascentralrs3131379
openSNPrs3131379
23andMers3131379
23andMe allrs3131379
SNP Nexus

SNPshotrs3131379
SNPdbers3131379
MSV3drs3131379
GWAS Ctlgrs3131379
GMAF0.04408
Max Magnitude0
? (C;C) (C;T) (T;T) 28
GWAS snp
PMID [PMID 18204446OA-icon.png]
Trait Systemic lupus erythematosus in women
Title Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci
Risk Allele A
P-val 2E-52
Odds Ratio 2.36 [2.11-2.64]
OMIM612593
DescLUNG CANCER SUSCEPTIBILITY 4; LNCR4
Variant
Relatedalso
[PMID 22382497OA-icon.png] Lung Cancer and DNA Repair Genes: Multilevel Association Analysis from the International Lung Cancer Consortium


[PMID 18978787OA-icon.png] Common 5p15.33 and 6p21.33 variants influence lung cancer risk.


[PMID 19197363OA-icon.png] A genome-wide investigation of SNPs and CNVs in schizophrenia.


[PMID 19474294OA-icon.png] Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.


[PMID 19849816OA-icon.png] Genetics of rheumatic disease.


[PMID 20017995OA-icon.png] A principal-components-based clustering method to identify multiple variants associated with rheumatoid arthritis and arthritis-related autoantibodies.


[PMID 20805886OA-icon.png] Unique DNA repair gene variations and potential associations with the primary antibody deficiency syndromes IgAD and CVID.


[PMID 21952918OA-icon.png] Evidence for gene-gene epistatic interactions among susceptibility loci for systemic lupus erythematosus.


GET Evidence
rs3131379
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.09314
summary



[PMID 25187487] Susceptibility loci for lung cancer are associated with mRNA levels of nearby genes in the lung