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rs339331

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(C;C) 0 normal
(T;T) 2.5 Prostate cancer risk
Make rs339331(C;T)
ReferenceGRCh38 38.1/141
Chromosome6
Position116888889
GeneRFX6
is asnp
is mentioned by
dbSNPrs339331
ebirs339331
HLIrs339331
Exacrs339331
Varsomers339331
Maprs339331
PheGenIrs339331
hapmaprs339331
1000 genomesrs339331
hgdprs339331
ensemblrs339331
gopubmedrs339331
geneviewrs339331
scholarrs339331
googlers339331
pharmgkbrs339331
gwascentralrs339331
openSNPrs339331
23andMers339331
23andMe allrs339331
SNP Nexus

SNPshotrs339331
SNPdbers339331
MSV3drs339331
GWAS Ctlgrs339331
GMAF0.3182
Max Magnitude2.5
? (C;C) (C;T) (T;T) 28
GWAS snp
PMID [PMID 20676098]
Trait
Title Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population
Risk Allele T
P-val 2E-12
Odds Ratio 1.22 [1.15-1.28]


[PMID 22056501OA-icon.png] Replication of five prostate cancer loci identified in an Asian population - Results from the NCI Breast and Prostate Cancer Cohort Consortium (BPC3)


[PMID 22114074OA-icon.png] Replication and cumulative effects of GWAS-identified genetic variations for prostate cancer in Asians: a case-control study in the ChinaPCa consortium.


[PMID 22662242OA-icon.png] Replication and fine mapping for association of the C2orf43, FOXP4, GPRC6A and RFX6 genes with prostate cancer in the Chinese population


[PMID 23405784] [Susceptibility to prostate cancer in Han Chinese: single nucleotide polymorphism analysis of 1 667 cases]


[PMID 24390282] A prostate cancer susceptibility allele at 6q22 increases RFX6 expression by modulating HOXB13 chromatin binding


[PMID 23620269] Genetic variants in 2q31 and 5p15 are associated with aggressive benign prostatic hyperplasia in a Chinese population.


[PMID 26398868] CAUSEL: an epigenome- and genome-editing pipeline for establishing function of noncoding GWAS variants