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rs3828309

From SNPedia

Orientationminus
Stabilizedminus
Make rs3828309(C;C)
Make rs3828309(C;T)
Make rs3828309(T;T)
ReferenceGRCh38 38.1/141
Chromosome2
Position233271764
GeneATG16L1
is asnp
is mentioned by
dbSNPrs3828309
ebirs3828309
HLIrs3828309
Exacrs3828309
Varsomers3828309
Maprs3828309
PheGenIrs3828309
hapmaprs3828309
1000 genomesrs3828309
hgdprs3828309
ensemblrs3828309
gopubmedrs3828309
geneviewrs3828309
scholarrs3828309
googlers3828309
pharmgkbrs3828309
gwascentralrs3828309
openSNPrs3828309
23andMers3828309
23andMe allrs3828309
SNP Nexus

SNPshotrs3828309
SNPdbers3828309
MSV3drs3828309
GWAS Ctlgrs3828309
GMAF0.3742
Max Magnitude
? (C;C) (C;T) (T;T) 28
GWAS snp
PMID [PMID 18587394OA-icon.png]
Trait Crohn's disease
Title Genome-wide assocation defines more than 30 distinct susceptibility loci for Crohn's disease
Risk Allele G
P-val 2.0000000000000001E-32
Odds Ratio 1.25 [NR]
OMIM611081
DescINFLAMMATORY BOWEL DISEASE 10; IBD10
Variant
Relatedalso
[PMID 19557189OA-icon.png] Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions.


[PMID 21304977OA-icon.png] An investigation of genome-wide studies reported susceptibility loci for ulcerative colitis shows limited replication in north Indians.


GET Evidence
rs3828309
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.328125
summary



[PMID 23725363] Predicting complicated Crohn's disease and surgery: phenotypes, genetics, serology and psychological characteristics of a population-based cohort.