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rs3890182

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(A;A)
(G;G) 0 common in complete genomics
Make rs3890182(A;G)
ReferenceGRCh38 38.1/141
Chromosome9
Position104885374
GeneABCA1
is asnp
is mentioned by
dbSNPrs3890182
ebirs3890182
HLIrs3890182
Exacrs3890182
Varsomers3890182
Maprs3890182
PheGenIrs3890182
hapmaprs3890182
1000 genomesrs3890182
hgdprs3890182
ensemblrs3890182
gopubmedrs3890182
geneviewrs3890182
scholarrs3890182
googlers3890182
pharmgkbrs3890182
gwascentralrs3890182
openSNPrs3890182
23andMers3890182
23andMe allrs3890182
SNP Nexus

SNPshotrs3890182
SNPdbers3890182
MSV3drs3890182
GWAS Ctlgrs3890182
GMAF0.1033
Max Magnitude0
? (A;A) (A;G) (G;G) 28
GWAS snp
PMID [PMID 18193044OA-icon.png]
Trait HDL cholesterol
Title Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans
Risk Allele A
P-val 3E-10
Odds Ratio 0.10 [0.06-0.14]% SD lower
OMIM600046
DescATP-BINDING CASSETTE, SUBFAMILY A, MEMBER 1; ABCA1
Variant
Relatedalso
[PMID 19773416OA-icon.png] A gene score of nine LDL and HDL regulating genes is associated with fluvastatin-induced cholesterol changes in women
GWAS snp
PMID [PMID 20864672OA-icon.png]
Trait
Title Genetic Variants Influencing Circulating Lipid Levels and Risk of Coronary Artery Disease
Risk Allele G
P-val 5E-7
Odds Ratio 0.02 [0.01-0.03] unit increase
OMIM600046
Desc
Variant0025
Relatedalso
[PMID 18179892OA-icon.png] Genome-wide association study identifies genes for biomarkers of cardiovascular disease: serum urate and dyslipidemia.


[PMID 19041386OA-icon.png] Genetic-epidemiological evidence on genes associated with HDL cholesterol levels: a systematic in-depth review.


[PMID 19060910OA-icon.png] Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.


[PMID 19148283OA-icon.png] Genetic differences between the determinants of lipid profile phenotypes in African and European Americans: the Jackson Heart Study.


[PMID 19197348OA-icon.png] Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.


[PMID 19606474OA-icon.png] A survey of ABCA1 sequence variation confirms association with dementia.


[PMID 19951432OA-icon.png] Analysis of recently identified dyslipidemia alleles reveals two loci that contribute to risk for carotid artery disease.


[PMID 20018036OA-icon.png] Using a latent growth curve model for an integrative assessment of the effects of genetic and environmental factors on multiple phenotypes.


[PMID 20502693OA-icon.png] Genetics and beyond--the transcriptome of human monocytes and disease susceptibility.


GET Evidence
rs3890182
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.140625
summary



[PMID 26252223OA-icon.png] Genetic Variants Associated with Lipid Profiles in Chinese Patients with Type 2 Diabetes