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rs3905000

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(G;G) 0 common in complete genomics
Make rs3905000(A;A)
Make rs3905000(A;G)
ReferenceGRCh38 38.1/141
Chromosome9
Position104894789
GeneABCA1
is asnp
is mentioned by
dbSNPrs3905000
ebirs3905000
HLIrs3905000
Exacrs3905000
Varsomers3905000
Maprs3905000
PheGenIrs3905000
hapmaprs3905000
1000 genomesrs3905000
hgdprs3905000
ensemblrs3905000
gopubmedrs3905000
geneviewrs3905000
scholarrs3905000
googlers3905000
pharmgkbrs3905000
gwascentralrs3905000
openSNPrs3905000
23andMers3905000
23andMe allrs3905000
SNP Nexus

SNPshotrs3905000
SNPdbers3905000
MSV3drs3905000
GWAS Ctlgrs3905000
GMAF0.1327
Max Magnitude0
? (A;A) (A;G) (G;G) 28
GWAS snp
PMID [PMID 19060911OA-icon.png]
Trait HDL cholesterol
Title Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts
Risk Allele G
P-val 9E-13
Odds Ratio 0.11 [NR] SD increase


GWAS snp
PMID [PMID 21116278]
Trait
Title Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease
Risk Allele
P-val 0.000009
Odds Ratio 0.0126 [NR] unit increase (interaction)


[PMID 19041386OA-icon.png] Genetic-epidemiological evidence on genes associated with HDL cholesterol levels: a systematic in-depth review.


[PMID 19951432OA-icon.png] Analysis of recently identified dyslipidemia alleles reveals two loci that contribute to risk for carotid artery disease.


[PMID 20502693OA-icon.png] Genetics and beyond--the transcriptome of human monocytes and disease susceptibility.


[PMID 21347282OA-icon.png] Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.


GET Evidence
rs3905000
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.171875
summary