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rs41298401

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(C;C) 0 common in complete genomics
Make rs41298401(C;G)
Make rs41298401(G;G)
ReferenceGRCh38 38.1/141
Chromosome7
Position128938253
GeneIRF5
is asnp
is mentioned by
dbSNPrs41298401
ebirs41298401
HLIrs41298401
Exacrs41298401
Varsomers41298401
Maprs41298401
PheGenIrs41298401
hapmaprs41298401
1000 genomesrs41298401
hgdprs41298401
ensemblrs41298401
gopubmedrs41298401
geneviewrs41298401
scholarrs41298401
googlers41298401
pharmgkbrs41298401
gwascentralrs41298401
openSNPrs41298401
23andMers41298401
23andMe allrs41298401
SNP Nexus

SNPshotrs41298401
SNPdbers41298401
MSV3drs41298401
GWAS Ctlgrs41298401
GMAF0.08173
Max Magnitude0
[PMID 18311811] Japanese 277 SLE patients and 201 controls. Carriers of the rs2004640T slightly increased among SLE patients (58.8%) as compared with controls (50.2%). When data from our Japanese population were combined with previously published data from a Korean population, the T allele frequency was found to be significantly increased in SLE patients (P = 8.3 x 10(-5)). While no association was observed for the rs10954213 . significant associations with 3 intron 1 SNPs (-4001, rs6953165, and rs41298401) were found. The allele frequency of rs41298401G was significantly decreased in SLE patients (13.0% versus 18.7% in controls; P = 0.017), and the allele frequency of rs6953165G, which was in absolute linkage disequilibrium with -4001A, was increased in SLE patients (8.8% versus 5.2% in controls; P = 0.034). The Caucasian risk haplotype was not present; instead, a protective haplotype carrying rs2004640G, rs41298401G, the deletion in exon 6, and rs10954213A was identified. SNP rs10954213
Neighborrs2004640
Distance6