Have questions? Visit https://www.reddit.com/r/SNPedia

rs4263839

From SNPedia

Orientationplus
Stabilizedplus
Make rs4263839(A;A)
Make rs4263839(A;G)
Make rs4263839(G;G)
ReferenceGRCh38 38.1/141
Chromosome9
Position114804160
GeneTNFSF15
is asnp
is mentioned by
dbSNPrs4263839
ebirs4263839
HLIrs4263839
Exacrs4263839
Varsomers4263839
Maprs4263839
PheGenIrs4263839
hapmaprs4263839
1000 genomesrs4263839
hgdprs4263839
ensemblrs4263839
gopubmedrs4263839
geneviewrs4263839
scholarrs4263839
googlers4263839
pharmgkbrs4263839
gwascentralrs4263839
openSNPrs4263839
23andMers4263839
23andMe allrs4263839
SNP Nexus

SNPshotrs4263839
SNPdbers4263839
MSV3drs4263839
GWAS Ctlgrs4263839
GMAF0.2957
Max Magnitude
? (A;A) (A;G) (G;G) 28
GWAS snp
PMID [PMID 18587394OA-icon.png]
Trait Crohn's disease
Title Genome-wide assocation defines more than 30 distinct susceptibility loci for Crohn's disease
Risk Allele G
P-val 3E-10
Odds Ratio 1.22 [NR]
OMIM612259
DescINFLAMMATORY BOWEL DISEASE 16; IBD16
Variant
Relatedalso
[PMID 21636646OA-icon.png] Association of TNFSF15 polymorphism with irritable bowel syndrome


[PMID 19557189OA-icon.png] Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions.


[PMID 21304977OA-icon.png] An investigation of genome-wide studies reported susceptibility loci for ulcerative colitis shows limited replication in north Indians.


GET Evidence
rs4263839
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.757812
summary



[PMID 25028192] Associations between TNFSF15 polymorphisms and susceptibility to ulcerative colitis and Crohn's disease: A meta-analysis


[PMID 25824902] A meta-analysis of immunogenetic Case-Control Association Studies in irritable bowel syndrome


[PMID 25501099OA-icon.png] Protective association of tumor necrosis factor superfamily 15 (TNFSF15) polymorphic haplotype with Ulcerative Colitis and Crohn's disease in an Indian population


[PMID 27647972] A case-control study about the association between vascular endothelial growth inhibitor gene polymorphisms and breast cancer risk in female patients in Northeast China.