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rs4624820

From SNPedia

Orientationplus
Stabilizedplus


Make rs4624820(G;G)
ReferenceGRCh38 38.1/141
Chromosome5
Position142302223
is asnp
is mentioned by
dbSNPrs4624820
ebirs4624820
HLIrs4624820
Exacrs4624820
Varsomers4624820
Maprs4624820
PheGenIrs4624820
hapmaprs4624820
1000 genomesrs4624820
hgdprs4624820
ensemblrs4624820
gopubmedrs4624820
geneviewrs4624820
scholarrs4624820
googlers4624820
pharmgkbrs4624820
gwascentralrs4624820
openSNPrs4624820
23andMers4624820
23andMe allrs4624820
SNP Nexus

SNPshotrs4624820
SNPdbers4624820
MSV3drs4624820
GWAS Ctlgrs4624820
GMAF0.4844
Max Magnitude
? (A;A) (A;G) (G;G) 28
23andMe blog each rs4624820(A) increases the odds of testicular cancer by 1.37x
GWAS snp
PMID [PMID 19483681OA-icon.png]
Trait Testicular germ cell tumor
Title A genome-wide association study of testicular germ cell tumor
Risk Allele A
P-val 3E-13
Odds Ratio 1.37 [1.19-1.58]
GWAS snp
PMID [PMID 20543847OA-icon.png]
Trait Testicular germ cell cancer
Title Variants near DMRT1, TERT and ATF7IP are associated with testicular germ cell cancer
Risk Allele
P-val 1E-14
Odds Ratio 1.47 [1.33-1.64]
OMIM273300
Desc
Variant
Relatedalso


GET Evidence
rs4624820
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.554688
summary



GWAS snp
PMID [PMID 23666239OA-icon.png]
Trait Testicular germ cell tumor
Title Meta-analysis identifies four new loci associated with testicular germ cell tumor.
Risk Allele G
P-val 8E-10
Odds Ratio 1.64 [1.39-1.89]
GWAS snp
PMID [PMID 23666240OA-icon.png]
Trait Testicular germ cell tumor
Title Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.
Risk Allele A
P-val 3E-31
Odds Ratio 1.52 [1.38-1.67]