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rs471364

From SNPedia

Orientationminus
Stabilizedminus
Geno Mag Summary
(A;A) 0 common in complete genomics
Make rs471364(A;G)
Make rs471364(G;G)
ReferenceGRCh38 38.1/141
Chromosome9
Position15289580
GeneTTC39B
is asnp
is mentioned by
dbSNPrs471364
ebirs471364
HLIrs471364
Exacrs471364
Varsomers471364
Maprs471364
PheGenIrs471364
hapmaprs471364
1000 genomesrs471364
hgdprs471364
ensemblrs471364
gopubmedrs471364
geneviewrs471364
scholarrs471364
googlers471364
pharmgkbrs471364
gwascentralrs471364
openSNPrs471364
23andMers471364
23andMe allrs471364
SNP Nexus

SNPshotrs471364
SNPdbers471364
MSV3drs471364
GWAS Ctlgrs471364
GMAF0.1028
Max Magnitude0
? (A;A) (A;G) (G;G) 28
per the 23andMe blog, the minor allele of this SNP (C) was associated with decreased HDL cholesterol
SNP Rarer allele LDL HDL TG
rs6544713 T +
rs2650000 A +
rs471364 C -
rs1800961 T -
rs7679 C - +
rs2967605 T -
rs2409722 T -
rs10903129 A - - -
rs6756629 A - + -
rs12670798 C + + +
rs7395662 A - + +
rs174570 T - - +
rs2271293 A - + -
rs2624265 C +
rs2167079 T +
rs9891572 T +
rs4844614 T +
rs5031002 G +
GWAS snp
PMID [PMID 19060906OA-icon.png]
Trait HDL cholesterol
Title Common variants at 30 loci contribute to polygenic dyslipidemia
Risk Allele C
P-val 3E-10
Odds Ratio 0.08 [0.02-0.14] SD decrease



[PMID 21738485OA-icon.png] Genetic determinants of lipid traits in diverse populations from the population architecture using genomics and epidemiology (PAGE) study


[PMID 19951432OA-icon.png] Analysis of recently identified dyslipidemia alleles reveals two loci that contribute to risk for carotid artery disease.


[PMID 20385826OA-icon.png] Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).


GET Evidence
rs471364
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.882812
summary