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rs477515

From SNPedia

Orientationminus
Stabilizedminus
Make rs477515(C;C)
Make rs477515(C;T)
Make rs477515(T;T)
ReferenceGRCh38 38.1/141
Chromosome6
Position32601914
is asnp
is mentioned by
dbSNPrs477515
ebirs477515
HLIrs477515
Exacrs477515
Varsomers477515
Maprs477515
PheGenIrs477515
hapmaprs477515
1000 genomesrs477515
hgdprs477515
ensemblrs477515
gopubmedrs477515
geneviewrs477515
scholarrs477515
googlers477515
pharmgkbrs477515
gwascentralrs477515
openSNPrs477515
23andMers477515
23andMe allrs477515
SNP Nexus

SNPshotrs477515
SNPdbers477515
MSV3drs477515
GWAS Ctlgrs477515
GMAF0.2498
Max Magnitude
? (C;C) (C;T) (T;T) 28
GWAS snp
PMID [PMID 18758464OA-icon.png]
Trait Inflammatory bowel disease
Title Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease
Risk Allele
P-val 1E-8
Odds Ratio 1.38 [1.23-1.54]


[PMID 20018025OA-icon.png] Genome-wide analysis of haplotype interaction for the data from the North American Rheumatoid Arthritis Consortium.


[PMID 20018071OA-icon.png] Allelic based gene-gene interactions in rheumatoid arthritis.


[PMID 20018075OA-icon.png] Genome-wide association study of rheumatoid arthritis by a score test based on wavelet transformation.


[PMID 20369022OA-icon.png] Candidate causal regulatory effects by integration of expression QTLs with complex trait genetic associations.


GET Evidence
rs477515
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.132653
summary



GWAS snp
PMID [PMID 23326239OA-icon.png]
Trait Epstein-Barr virus immune response (EBNA-1)
Title A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1).
Risk Allele T
P-val 3E-13
Odds Ratio .28 [NR] unit decrease
GWAS snp
PMID [PMID 24282030]
Trait Hepatitis B vaccine response
Title A genome-wide association study identifies polymorphisms in the HLA-DR region associated with non-response to hepatitis B vaccination in Chinese Han populations.
Risk Allele T
P-val 3E-19
Odds Ratio 2.05 [1.75-2.41]