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rs4820599

From SNPedia

Orientationplus
Stabilizedplus
Make rs4820599(A;A)
Make rs4820599(A;G)
Make rs4820599(G;G)
ReferenceGRCh38 38.1/141
Chromosome22
Position24594246
GeneC22orf36, GGT1
is asnp
is mentioned by
dbSNPrs4820599
ebirs4820599
HLIrs4820599
Exacrs4820599
Varsomers4820599
Maprs4820599
PheGenIrs4820599
hapmaprs4820599
1000 genomesrs4820599
hgdprs4820599
ensemblrs4820599
gopubmedrs4820599
geneviewrs4820599
scholarrs4820599
googlers4820599
pharmgkbrs4820599
gwascentralrs4820599
openSNPrs4820599
23andMers4820599
23andMe allrs4820599
SNP Nexus

SNPshotrs4820599
SNPdbers4820599
MSV3drs4820599
GWAS Ctlgrs4820599
GMAF0.4155
Max Magnitude
? (A;A) (A;G) (G;G) 28
GWAS snp
PMID [PMID 18940312OA-icon.png]
Trait Plasma levels of liver enzymes
Title Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes
Risk Allele G
P-val 4E-11
Odds Ratio 0.01 [0.005-0.009] U/L increase
OMIM612365
DescGAMMA GLUTAMYLTRANSFERASE, PLASMA LEVEL OF, QUANTITATIVE TRAIT LOCUS
Variant
Relatedalso
[PMID 20484958OA-icon.png] Pooling-Based Genome-Wide Association Study Implicates Gamma-Glutamyltransferase 1 (GGT1) Gene in Pancreatic Carcinogenesis
GWAS snp
PMID [PMID 21909109]
Trait
Title Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.
Risk Allele G
P-val 7E-53
Odds Ratio 0.0088 [0.0076-0.0100] IU/L decrease


GET Evidence
rs4820599
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.46875
summary May be associated with the pancreatic cancer risk.



[PMID 23462328OA-icon.png] Variation in the γ-glutamyltransferase 1 gene and risk of chronic pancreatitis