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rs4869742

From SNPedia

Orientationplus
Stabilizedplus
Make rs4869742(C;C)
Make rs4869742(C;T)
Make rs4869742(T;T)
ReferenceGRCh38 38.1/141
Chromosome6
Position151586613
GeneCCDC170
is asnp
is mentioned by
dbSNPrs4869742
ebirs4869742
HLIrs4869742
Exacrs4869742
Varsomers4869742
Maprs4869742
PheGenIrs4869742
hapmaprs4869742
1000 genomesrs4869742
hgdprs4869742
ensemblrs4869742
gopubmedrs4869742
geneviewrs4869742
scholarrs4869742
googlers4869742
pharmgkbrs4869742
gwascentralrs4869742
openSNPrs4869742
23andMers4869742
23andMe allrs4869742
SNP Nexus

SNPshotrs4869742
SNPdbers4869742
MSV3drs4869742
GWAS Ctlgrs4869742
GMAF0.4651
Max Magnitude
? (C;C) (C;T) (T;T) 28
Rs4869742
PubMed [PMID 18445777]
Affy Probeset SNP_A-8484827
Affy Orientation same
On GW 5.0
Alleles A/B C/T
Ancestral C
Population Caucasian
Allele T
Case Freq.
Control Freq.
Odds Ratio Het
Odds Ratio Hom
Odds Ratio All -
Disease Bone mineral density, lower (BMD-L)


rs4869742 is in linkage disequilibrium with a polymorphism that increases susceptibility to Bone mineral density variations, lower for carriers of the T allele [PMID 18445777]

GWAS snp
PMID [PMID 21540461]
Trait
Title A genome-wide association study identifies novel loci associated with susceptibility to chronic myeloid leukemia.
Risk Allele T
P-val 0.000002
Odds Ratio 1.6700 [1.35-2.04]
GWAS snp
PMID [PMID 22504420OA-icon.png]
Trait
Title Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.
Risk Allele T
P-val 4E-35
Odds Ratio 0.0800 None