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rs4979462

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(C;C) 1 Normal risk of developing primary biliary cirrhosis
(C;T) 1.5 Slightly increased risk of developing primary biliary cirrhosis
(T;T) 2 Increased risk of developing primary biliary cirrhosis
ReferenceGRCh38 38.1/141
Chromosome9
Position114804733
GeneTNFSF15
is asnp
is mentioned by
dbSNPrs4979462
ebirs4979462
HLIrs4979462
Exacrs4979462
Varsomers4979462
Maprs4979462
PheGenIrs4979462
hapmaprs4979462
1000 genomesrs4979462
hgdprs4979462
ensemblrs4979462
gopubmedrs4979462
geneviewrs4979462
scholarrs4979462
googlers4979462
pharmgkbrs4979462
gwascentralrs4979462
openSNPrs4979462
23andMers4979462
23andMe allrs4979462
SNP Nexus

SNPshotrs4979462
SNPdbers4979462
MSV3drs4979462
GWAS Ctlgrs4979462
GMAF0.197
Max Magnitude2
? (C;C) (C;T) (T;T) 28
GWAS snp
PMID [PMID 23000144OA-icon.png]
Trait Primary biliary cirrhosis
Title Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population.
Risk Allele T
P-val 3E-14
Odds Ratio 1.56 [1.39-1.76]


[PMID 25028192] Associations between TNFSF15 polymorphisms and susceptibility to ulcerative colitis and Crohn's disease: A meta-analysis


[PMID 25899471] Human primary biliary cirrhosis-susceptible allele of rs4979462 enhances TNFSF15 expression by binding NF-1


[PMID 27647972] A case-control study about the association between vascular endothelial growth inhibitor gene polymorphisms and breast cancer risk in female patients in Northeast China.