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rs5031002

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(G;G) 0 common on affy axiom data
Make rs5031002(A;A)
Make rs5031002(A;G)
ReferenceGRCh38 38.1/141
ChromosomeX
Position67722783
GeneAR
is asnp
is mentioned by
dbSNPrs5031002
ebirs5031002
HLIrs5031002
Exacrs5031002
Varsomers5031002
Maprs5031002
PheGenIrs5031002
hapmaprs5031002
1000 genomesrs5031002
hgdprs5031002
ensemblrs5031002
gopubmedrs5031002
geneviewrs5031002
scholarrs5031002
googlers5031002
pharmgkbrs5031002
gwascentralrs5031002
openSNPrs5031002
23andMers5031002
23andMe allrs5031002
SNP Nexus

SNPshotrs5031002
SNPdbers5031002
MSV3drs5031002
GWAS Ctlgrs5031002
GMAF0.01572
Max Magnitude0
? (A;A) (A;G) (G;G) 28

Per the 23andMe blog, the minor allele of this SNP (A) was associated with increased LDL cholesterol (wrong allele listed on the 23andMe blog)

SNP Rarer allele LDL HDL TG
rs6544713 T +
rs2650000 A +
rs471364 C -
rs1800961 T -
rs7679 C - +
rs2967605 T -
rs2409722 T -
rs10903129 A - - -
rs6756629 A - + -
rs12670798 C + + +
rs7395662 A - + +
rs174570 T - - +
rs2271293 A - + -
rs2624265 C +
rs2167079 T +
rs9891572 T +
rs4844614 T +
rs5031002 A +
GWAS snp
PMID [PMID 19060910OA-icon.png]
Trait LDL cholesterol
Title Genome-wide association analysis of metabolic traits in a birth cohort from a founder population
Risk Allele A
P-val 2E-7
Odds Ratio 0.30 [0.18-0.41] mmol/l increase



GET Evidence
rs5031002
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.0186052
summary