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rs548234

From SNPedia

Orientationplus
Stabilizedplus
Make rs548234(C;C)
Make rs548234(C;T)
Make rs548234(T;T)
ReferenceGRCh38 38.1/141
Chromosome6
Position106120159
GeneLOC100287304
is asnp
is mentioned by
dbSNPrs548234
ebirs548234
HLIrs548234
Exacrs548234
Varsomers548234
Maprs548234
PheGenIrs548234
hapmaprs548234
1000 genomesrs548234
hgdprs548234
ensemblrs548234
gopubmedrs548234
geneviewrs548234
scholarrs548234
googlers548234
pharmgkbrs548234
gwascentralrs548234
openSNPrs548234
23andMers548234
23andMe allrs548234
SNP Nexus

SNPshotrs548234
SNPdbers548234
MSV3drs548234
GWAS Ctlgrs548234
GMAF0.23
Max Magnitude
? (C;C) (C;T) (T;T) 28
GWAS snp
PMID [PMID 19838193]
Trait Systemic lupus erythematosus
Title Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus
Risk Allele G
P-val 5E-12
Odds Ratio 1.25 [1.17-1.33]
OMIM180300
Desc
Variant
Relatedalso


[PMID 21622776] Genetic association of PRDM1-ATG5 intergenic region and autophagy with systemic lupus erythematosus in a Chinese population


[PMID 22040493] Rs548234 polymorphism at PRDM1-ATG5 region susceptible to rheumatoid arthritis in Caucasians is not associated with rheumatoid arthritis in Chinese Han population


[PMID 19898481OA-icon.png] Genetic variants at CD28, PRDM1 and CD2/CD58 are associated with rheumatoid arthritis risk.


GET Evidence
rs548234
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.765625
summary



[PMID 22328738OA-icon.png] Comprehensive assessment of rheumatoid arthritis susceptibility loci in a large psoriatic arthritis cohort.


[PMID 26420661] Gene-gene interaction of ATG5, ATG7, BLK and BANK1 in systemic lupus erythematosus