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rs5880

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(G;G) 0 common in complete genomics
Make rs5880(C;C)
Make rs5880(C;G)
ReferenceGRCh38 38.1/141
Chromosome16
Position56981179
GeneCETP
is asnp
is mentioned by
dbSNPrs5880
ebirs5880
HLIrs5880
Exacrs5880
Varsomers5880
Maprs5880
PheGenIrs5880
hapmaprs5880
1000 genomesrs5880
hgdprs5880
ensemblrs5880
gopubmedrs5880
geneviewrs5880
scholarrs5880
googlers5880
pharmgkbrs5880
gwascentralrs5880
openSNPrs5880
23andMers5880
23andMe allrs5880
SNP Nexus

SNPshotrs5880
SNPdbers5880
MSV3drs5880
GWAS Ctlgrs5880
GMAF0.03398
Max Magnitude0
? (C;C) (C;G) (G;G) 28
[PMID 12475937OA-icon.png] Association testing by DNA pooling: an effective initial screen.


[PMID 12802015OA-icon.png] Direct molecular haplotyping of long-range genomic DNA with M1-PCR.


[PMID 16700901OA-icon.png] Physiogenomic analysis of weight loss induced by dietary carbohydrate restriction.


[PMID 18254975OA-icon.png] Physiogenomic comparison of human fat loss in response to diets restrictive of carbohydrate or fat.


[PMID 19041386OA-icon.png] Genetic-epidemiological evidence on genes associated with HDL cholesterol levels: a systematic in-depth review.


[PMID 19802338OA-icon.png] Genetic loci associated with plasma concentration of low-density lipoprotein cholesterol, high-density lipoprotein cholesterol, triglycerides, apolipoprotein A1, and Apolipoprotein B among 6382 white women in genome-wide analysis with replication.


[PMID 19913121OA-icon.png] Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.


[PMID 20031564OA-icon.png] Polymorphism in the CETP gene region, HDL cholesterol, and risk of future myocardial infarction: Genomewide analysis among 18 245 initially healthy women from the Women's Genome Health Study.


GET Evidence
CETP-A390P
aa_change Ala390Pro
aa_change_short A390P
impact pathogenic
qualified_impact Low clinical importance, Likely pathogenic
overall_frequency 0.0388548
summary This variant is associated with slightly lower HDL (good) cholesterol, although it has a negligible effect (around 2 mg/dl).



GWAS snp
PMID [PMID 24886709OA-icon.png]
Trait HDL cholesterol
Title Amerindian-specific regions under positive selection harbour new lipid variants in Latinos.
Risk Allele C
P-val 2E-16
Odds Ratio .29 [NR] unit decrease