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rs6017342

From SNPedia

Orientationplus
Stabilizedplus
Make rs6017342(A;A)
Make rs6017342(A;C)
Make rs6017342(C;C)
ReferenceGRCh38 38.1/141
Chromosome20
Position44436388
is asnp
is mentioned by
dbSNPrs6017342
ebirs6017342
HLIrs6017342
Exacrs6017342
Varsomers6017342
Maprs6017342
PheGenIrs6017342
hapmaprs6017342
1000 genomesrs6017342
hgdprs6017342
ensemblrs6017342
gopubmedrs6017342
geneviewrs6017342
scholarrs6017342
googlers6017342
pharmgkbrs6017342
gwascentralrs6017342
openSNPrs6017342
23andMers6017342
23andMe allrs6017342
SNP Nexus

SNPshotrs6017342
SNPdbers6017342
MSV3drs6017342
GWAS Ctlgrs6017342
GMAF0.2906
Max Magnitude
? (A;A) (A;C) (C;C) 28
GWAS snp
PMID [PMID 19915572OA-icon.png]
Trait Ulcerative colitis
Title Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region
Risk Allele C
P-val 9E-17
Odds Ratio 1.17 [1.09-1.26]
OMIM612566
Desc
Variant
Relatedalso
GWAS snp
PMID [PMID 21297633OA-icon.png]
Trait
Title Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47
Risk Allele C
P-val 1E-20
Odds Ratio 1.2000 [1.15-1.26]


[PMID 21744425] HNF4? and CDH1 are associated with ulcerative colitis in a Dutch cohort


[PMID 21831733] Association of FCGR2A, JAK2 or HNF4A variants with ulcerative colitis in Koreans.


GET Evidence
rs6017342
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.746032
summary



GWAS snp
PMID [PMID 23128233OA-icon.png]
Trait Ulcerative colitis
Title Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Risk Allele C
P-val 1E-43
Odds Ratio 1.23 [1.185-1.273]