Have questions? Visit https://www.reddit.com/r/SNPedia

rs6457620

From SNPedia

Orientationplus
Stabilizedplus
Make rs6457620(C;C)
Make rs6457620(C;G)
Make rs6457620(G;G)
ReferenceGRCh38 38.1/141
Chromosome6
Position32696222
is asnp
is mentioned by
dbSNPrs6457620
ebirs6457620
HLIrs6457620
Exacrs6457620
Varsomers6457620
Maprs6457620
PheGenIrs6457620
hapmaprs6457620
1000 genomesrs6457620
hgdprs6457620
ensemblrs6457620
gopubmedrs6457620
geneviewrs6457620
scholarrs6457620
googlers6457620
pharmgkbrs6457620
gwascentralrs6457620
openSNPrs6457620
23andMers6457620
23andMe allrs6457620
SNP Nexus

SNPshotrs6457620
SNPdbers6457620
MSV3drs6457620
GWAS Ctlgrs6457620
GMAF0.4389
Max Magnitude
? (C;C) (C;G) (G;G) 28
GWAS snp
PMID [PMID 18794853OA-icon.png]
Trait Rheumatoid arthritis
Title Common variants at CD40 and other loci confer risk of rheumatoid arthritis
Risk Allele
P-val 0
Odds Ratio 2.55 [2.40-2.71]

An ambiguous flip whose risk allele could not be determined from the original data 10.1371/journal.pone.0023473

[PMID 17660530] Risk alleles for multiple sclerosis identified by a genomewide study.

[PMID 20335276OA-icon.png] PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations.

[PMID 20369022OA-icon.png] Candidate causal regulatory effects by integration of expression QTLs with complex trait genetic associations.

[PMID 20426808OA-icon.png] AntEpiSeeker: detecting epistatic interactions for case-control studies using a two-stage ant colony optimization algorithm.

[PMID 20546594OA-icon.png] An application of Random Forests to a genome-wide association dataset: methodological considerations & new findings.

[PMID 21739420] Genetic variants in the HLA-DRB1 gene are associated with Kashin-Beck disease in the Tibetan population.


GET Evidence
rs6457620
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.551724
summary



GWAS snp
PMID [PMID 20881960OA-icon.png]
Trait Height
Title Hundreds of variants clustered in genomic loci and biological pathways affect human height.
Risk Allele C
P-val 2E-16
Odds Ratio .03 [NR] unit decrease