rs7234029

Orientation

plus

Stabilized

plus

Geno	Mag	Summary
(A;A)	0	common/normal
(A;G)	1.3	Slightly increased (1.36x) risk for Crohn's disease
(G;G)	1.6	Slightly increased (1.6x) risk for Crohn's disease

Reference

GRCh38 38.1/141

Chromosome

18

Position

12877061

Gene

PTPN2

is a	snp
is	mentioned by
dbSNP	rs7234029
dbSNP (classic)	rs7234029
ClinGen	rs7234029
ebi	rs7234029
HLI	rs7234029
Exac	rs7234029
Gnomad	rs7234029
Varsome	rs7234029
LitVar	rs7234029
Map	rs7234029
PheGenI	rs7234029
Biobank	rs7234029
1000 genomes	rs7234029
hgdp	rs7234029
ensembl	rs7234029
geneview	rs7234029
scholar	rs7234029
google	rs7234029
pharmgkb	rs7234029
gwascentral	rs7234029
openSNP	rs7234029
23andMe	rs7234029
SNPshot	rs7234029
SNPdbe	rs7234029
MSV3d	rs7234029
GWAS Ctlg	rs7234029

GMAF

0.2856

Max Magnitude

1.6

?	(A;A) (A;G) (G;G)	28

[PMID 24127071] Associations between PTPN2 polymorphisms and susceptibility to ulcerative colitis and Crohn's disease: a meta-analysis

[PMID 24480412] PTPN2 rs1893217 single-nucleotide polymorphism is associated with risk of Behçet's disease in a Chinese Han population

[PMID 20722033] The susceptibility loci juvenile idiopathic arthritis shares with other autoimmune diseases extend to PTPN2, COG6, and ANGPT1.

[PMID 22328738] Comprehensive assessment of rheumatoid arthritis susceptibility loci in a large psoriatic arthritis cohort.

[PMID 23777930] Investigation of juvenile idiopathic arthritis susceptibility loci: results from a Greek population.