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rs7543472

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(C;C) normal
(C;T) weakly associated with increased cataract risk
(T;T) ~2x increased risk for cataracts
ReferenceGRCh38 38.1/141
Chromosome1
Position16113897
is asnp
is mentioned by
dbSNPrs7543472
dbSNP (classic)rs7543472
ClinGenrs7543472
ebirs7543472
HLIrs7543472
Exacrs7543472
Gnomadrs7543472
Varsomers7543472
LitVarrs7543472
Maprs7543472
PheGenIrs7543472
Biobankrs7543472
1000 genomesrs7543472
hgdprs7543472
ensemblrs7543472
geneviewrs7543472
scholarrs7543472
googlers7543472
pharmgkbrs7543472
gwascentralrs7543472
openSNPrs7543472
23andMers7543472
SNPshotrs7543472
SNPdbers7543472
MSV3drs7543472
GWAS Ctlgrs7543472
GMAF0.2002
Max Magnitude0
? (C;C) (C;T) (T;T) 28


rs7543472 is a SNP located 3' of the EPHA2 gene, which has at least one putative causative mutation leading to age-related cataracts. [PMID 19005574OA-icon.png]

A study involving a case-control cohort from Northern Italy, comprising 126 unrelated individuals with nuclear cataracts, 119 with cortical cataracts, and 104 unrelated controls with clear lenses, found increased risk associated two SNPs near the EPHA2 gene (rs7543472 and rs11260867). For rs7543472, the (T;T) genotype was as 1.9 - 2.1x increased risk for cataracts (p < 0.01). [PMID 19005574OA-icon.png]

OMIM116600
Desc
Variant
Relatedalso
OMIM613020
Desc
Variant
Relatedalso