rs80359541
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(-;C) | 6 | Likely miscall in Ancestry v2c data; otherwise, BRCA2 variant considered pathogenic for breast cancer |
(C;C) | 0 | common in clinvar |
Make rs80359541(-;-) |
Reference | GRCh38 38.1/141 |
Chromosome | 13 |
Position | 32340183 |
Gene | BRCA2 |
is a | snp |
is | mentioned by |
dbSNP | rs80359541 |
dbSNP (classic) | rs80359541 |
ClinGen | rs80359541 |
ebi | rs80359541 |
HLI | rs80359541 |
Exac | rs80359541 |
Gnomad | rs80359541 |
Varsome | rs80359541 |
LitVar | rs80359541 |
Map | rs80359541 |
PheGenI | rs80359541 |
Biobank | rs80359541 |
1000 genomes | rs80359541 |
hgdp | rs80359541 |
ensembl | rs80359541 |
geneview | rs80359541 |
scholar | rs80359541 |
rs80359541 | |
pharmgkb | rs80359541 |
gwascentral | rs80359541 |
openSNP | rs80359541 |
23andMe | rs80359541 |
SNPshot | rs80359541 |
SNPdbe | rs80359541 |
MSV3d | rs80359541 |
GWAS Ctlg | rs80359541 |
Max Magnitude | 6 |
rs80359541, also known as 6056delC, c.5828_5828delC and p.Ser1943Leufs, is a variant in the BRCA2 gene considered pathogenic for breast cancer in ClinVar.
ClinVar | |
---|---|
Risk | rs80359541(-;-) |
Alt | rs80359541(-;-) |
Reference | Rs80359541(C;C) |
Significance | Pathogenic |
Disease | Breast-ovarian cancer not provided Hereditary cancer-predisposing syndrome Hereditary breast and ovarian cancer syndrome |
Variation | info |
Gene | BRCA2 |
CLNDBN | Breast-ovarian cancer, familial 2 not provided Hereditary cancer-predisposing syndrome Hereditary breast and ovarian cancer syndrome |
Reversed | 0 |
HGVS | NC_000013.10:g.32914320delC |
CLNSRC | Breast Cancer Information Core (BRCA2) |
CLNACC | RCV000031580.7, RCV000044766.6, RCV000131318.3, RCV000195355.2, |