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rs9286879

From SNPedia

Orientationplus
Stabilizedplus
Make rs9286879(A;A)
Make rs9286879(A;G)
Make rs9286879(G;G)
ReferenceGRCh38 38.1/141
Chromosome1
Position172893094
is asnp
is mentioned by
dbSNPrs9286879
ebirs9286879
HLIrs9286879
Exacrs9286879
Varsomers9286879
Maprs9286879
PheGenIrs9286879
hapmaprs9286879
1000 genomesrs9286879
hgdprs9286879
ensemblrs9286879
gopubmedrs9286879
geneviewrs9286879
scholarrs9286879
googlers9286879
pharmgkbrs9286879
gwascentralrs9286879
openSNPrs9286879
23andMers9286879
23andMe allrs9286879
SNP Nexus

SNPshotrs9286879
SNPdbers9286879
MSV3drs9286879
GWAS Ctlgrs9286879
GMAF0.478
Max Magnitude
? (A;A) (A;G) (G;G) 28
GWAS snp
PMID [PMID 18587394OA-icon.png]
Trait Crohn's disease
Title Genome-wide assocation defines more than 30 distinct susceptibility loci for Crohn's disease
Risk Allele G
P-val 2.0000000000000001E-9
Odds Ratio 1.19 [NR]
OMIM231070
DescGERODERMA OSTEODYSPLASTICUM; GO
Variant
Relatedalso

DeCode reports that rs9286879 is associated with susceptibility to Crohn's disease. [PMID 18587394OA-icon.png]


[PMID 19068216OA-icon.png] Investigation of Crohn's disease risk loci in ulcerative colitis further defines their molecular relationship.


[PMID 19557189OA-icon.png] Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions.


[PMID 21304977OA-icon.png] An investigation of genome-wide studies reported susceptibility loci for ulcerative colitis shows limited replication in north Indians.


GET Evidence
rs9286879
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.382812
summary



GWAS snp
PMID [PMID 23128233OA-icon.png]
Trait Crohn's disease
Title Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Risk Allele G
P-val 6E-22
Odds Ratio 1.13 [1.083-1.167]