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rs9303277

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(C;C) 1 Normal risk of developing primary biliary cirrhosis
(C;T) 1.5 1.46x Slightly increased risk of developing primary biliary cirrhosis
(T;T) 2 1.46x Increased risk of developing primary biliary cirrhosis
ReferenceGRCh38 38.1/141
Chromosome17
Position39820216
GeneIKZF3
is asnp
is mentioned by
dbSNPrs9303277
ebirs9303277
HLIrs9303277
Exacrs9303277
Varsomers9303277
Maprs9303277
PheGenIrs9303277
hapmaprs9303277
1000 genomesrs9303277
hgdprs9303277
ensemblrs9303277
gopubmedrs9303277
geneviewrs9303277
scholarrs9303277
googlers9303277
pharmgkbrs9303277
gwascentralrs9303277
openSNPrs9303277
23andMers9303277
23andMe allrs9303277
SNP Nexus

SNPshotrs9303277
SNPdbers9303277
MSV3drs9303277
GWAS Ctlgrs9303277
GMAF0.4858
Max Magnitude2
? (C;C) (C;T) (T;T) 28
GWAS snp
PMID [PMID 20639880OA-icon.png]
Trait Primary biliary cirrhosis
Title Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis
Risk Allele T
P-val 2E-9
Odds Ratio 1.38 [NR]
OMIM611403
Desc
Variant
Relatedalso
[PMID 21985515OA-icon.png] Association of genetic variants in chromosome 17q21 and adult-onset asthma in a Chinese Han population


[PMID 19426955OA-icon.png] Genome-wide association analysis identifies PDE4D as an asthma-susceptibility gene.


[PMID 19458352OA-icon.png] Primary biliary cirrhosis associated with HLA, IL12A, and IL12RB2 variants.


[PMID 19714205OA-icon.png] Genome-wide association study implicates chromosome 9q21.31 as a susceptibility locus for asthma in mexican children.


[PMID 19732864OA-icon.png] Allele-specific chromatin remodeling in the ZPBP2/GSDMB/ORMDL3 locus associated with the risk of asthma and autoimmune disease.


[PMID 20698975OA-icon.png] Asthma-susceptibility variants identified using probands in case-control and family-based analyses.

GWAS snp
PMID [PMID 23000144OA-icon.png]
Trait Primary biliary cirrhosis
Title Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population.
Risk Allele T
P-val 4E-9
Odds Ratio 1.44 [1.28-1.63]


[PMID 23154084OA-icon.png] Examination of the relationship between variation at 17q21 and childhood wheeze phenotypes


[PMID 23157251] Variants in the 17q21 asthma susceptibility locus are associated with allergic rhinitis in the Japanese population

GWAS snp
PMID [PMID 23740937OA-icon.png]
Trait Systemic lupus erythematosus and Systemic sclerosis
Title A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.
Risk Allele
P-val 7E-6
Odds Ratio 1.19 [NR]