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rs9472138

From SNPedia

Orientationplus
Stabilizedplus
Make rs9472138(C;C)
Make rs9472138(C;T)
Make rs9472138(T;T)
ReferenceGRCh38 38.1/141
Chromosome6
Position43844025
is asnp
is mentioned by
dbSNPrs9472138
ebirs9472138
HLIrs9472138
Exacrs9472138
Varsomers9472138
Maprs9472138
PheGenIrs9472138
hapmaprs9472138
1000 genomesrs9472138
hgdprs9472138
ensemblrs9472138
gopubmedrs9472138
geneviewrs9472138
scholarrs9472138
googlers9472138
pharmgkbrs9472138
gwascentralrs9472138
openSNPrs9472138
23andMers9472138
23andMe allrs9472138
SNP Nexus

SNPshotrs9472138
SNPdbers9472138
MSV3drs9472138
GWAS Ctlgrs9472138
GMAF0.2006
Max Magnitude
? (C;C) (C;T) (T;T) 28
GWAS snp
PMID [PMID 18372903OA-icon.png]
Trait Type 2 diabetes
Title Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes
Risk Allele T
P-val 0.0000039999999999999998
Odds Ratio 1.06 [1.04-1.09]


[PMID 19455301] Replication study for the association of new meta-analysis-derived risk loci with susceptibility to type 2 diabetes in 6,244 Japanese individuals


[PMID 22437209] Genetic variants on chromosome 6p21.1 and 6p22.3 are associated with type 2 diabetes risk: a case-control study in Han Chinese

[PMID 18714373OA-icon.png] Novel meta-analysis-derived type 2 diabetes risk loci do not determine prediabetic phenotypes.

[PMID 19020323OA-icon.png] Genotype score in addition to common risk factors for prediction of type 2 diabetes.

[PMID 19639606OA-icon.png] Correcting "winner's curse" in odds ratios from genomewide association findings for major complex human diseases.

[PMID 19956539OA-icon.png] How many genetic variants remain to be discovered?

[PMID 20075150OA-icon.png] Utility of genetic and non-genetic risk factors in prediction of type 2 diabetes: Whitehall II prospective cohort study.

[PMID 21084393OA-icon.png] Type 2 diabetes (T2D) associated polymorphisms regulate expression of adjacent transcripts in transformed lymphocytes, adipose, and muscle from Caucasian and African-American subjects.

[PMID 21278902OA-icon.png] Genetic risk profiling for prediction of type 2 diabetes.

[PMID 22377712] Association between type 2 diabetes genetic susceptibility loci and visceral and subcutaneous fat area as determined by computed tomography.


GET Evidence
rs9472138
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.195312
summary



GWAS snp
PMID [PMID 23408906OA-icon.png]
Trait Thyroid hormone levels
Title A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.
Risk Allele T
P-val 7E-16
Odds Ratio .08 [0.059-0.099] unit decrease
GWAS snp
PMID [PMID 24509480OA-icon.png]
Trait Type 2 diabetes
Title Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.
Risk Allele T
P-val 2E-7
Odds Ratio 1.06 [1.04-1.08]